RnoALTA0031321-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199380098-199380554:-
Coord C1 exon
chr1:199380289-199380554
Coord A exon
chr1:199380156-199380214
Coord C2 exon
chr1:199380098-199380155
Length
59 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CAGCTTTCTCTCCTCTTTAGTTC
3' ss Score
7.92
Exon sequences
Seq C1 exon
GCTGGGCTCCTCAACAGTGCCTTACATTGACGTATATCTGGGCCTGGCAGGGGTCAGCTCCCTCCCTCAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTTCCTCGGCATTCTGGACTTAGACCCCCCCTGGCCCTGCTGGAGCTGAATTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGAGGGTGTTCCCCCAGGGGCCAGCTGCTGGGTTCTGGGCTGGAAGGACCCACAGAACAGAG
Seq A exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAG
Seq C2 exon
GGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343-20-21,20-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGAGCTGAATTCTCGG
R:
AAGGTTCCAGGAGTCAGAGCG
Band lengths:
147-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]