HsaEX0050484 @ hg19
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31150251-31153281:-
Coord C1 exon
chr16:31153044-31153281
Coord A exon
chr16:31151813-31152078
Coord C2 exon
chr16:31150251-31150737
Length
266 bp
Sequences
Splice sites
3' ss Seq
ATTGGACCTTGTTCCAACAGGCC
3' ss Score
8.78
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
AATGACTCGCGTTGGAGCCTTTTGTGCCAGGAGGAGGGGACCTGGTTTCTGGCTGGAATCAGAGACTTTCCCAGTGGCTGTCTACGTCCCCGAGCCTTCTTCCCTCTGCAGACTCATGGCCCATGGATCAGCCATGTGACTCGGGGAGCCTACCTGGAGGACCAGCTAGCCTGGGATTGGGGCCCTGATGGGGAGGAGACTGAGACACAGACTTGTCCCCCACACACAGAGCATGGTG
Seq A exon
GCCAGGCTCTACAACAGTGCCTTACATTGAAGTGTATCTGGGCCGGGCAGGGGCCAGCTCCCTCCCACAGGGCCACCAGGTATCCCGCTTGGTCATCAGCATCCGGCTGCCCCAGCACCTGGGACTCAGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGGGTGGAGCCCTCCCCATCAGCCCTGCCCATCTGTCTCCACCCGGCGGGTATCCCCCCGGGGGCCAGCTGCTGGGTGTTGGGCTGGAAAGAACCCCAGGACCGAG
Seq C2 exon
ATGACCTCAGCACCGCCCCTCCTGTGCCAGATGACGGAAGGGTCCTGGATCCTCGTGGGCATGGCTGTTCAAGGGAGCCGGGAGCTGTTTGCTGCCATTGGTCCTGAAGAGGCCTGGATCTCCCAGACAGTGGGAGAGGCCAACTTCCTGCCCCCCAGTGGCTCCCCACACTGGCCCACTGGAGGCAGCAATCTCTGCCCCCCAGAACTGGCCAAGGCCTCGGGATCCCCGCATGCAGTCTACTTCCTGCTCCTGCTGACTCTCCTGATCCAGAGCTGAGGGGCTAGGGTCCCAGCACCACTTCCCCCTTCTCCACCCTCTACTTCCCGCCCAGTGGGGCTGGAATGTGGCCCAGCCGGCTGGAACCTCAAGGGCCCCACCCACCGAGATTGCAGCGGCTCTGGCTAATTGGGCCTCAGTGCCCGGGCTATTTTGAACCCAGGAATCCTTGGGGGTGGTGGGAGGAGCGGACAATAAAGGTGTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(16.7=46.2)
A:
PF093426=DUF1986=PD(38.5=92.6)
C2:
PF0008921=Trypsin=PD(14.1=30.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGGGGAGGAGACTGAG
R:
CAGGAAGTAGACTGCATGCGG
Band lengths:
304-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)