HsaALTD0005088-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31151615-31152078:-
Coord C1 exon
chr16:31152000-31152078
Coord A exon
chr16:31151813-31151999
Coord C2 exon
chr16:31151615-31151736
Length
187 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTTTGTCTCCTCTCCCCAGTCC
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCCAGGCTCTACAACAGTGCCTTACATTGAAGTGTATCTGGGCCGGGCAGGGGCCAGCTCCCTCCCACAGGGCCACCAG
Seq A exon
GTATCCCGCTTGGTCATCAGCATCCGGCTGCCCCAGCACCTGGGACTCAGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGGGTGGAGCCCTCCCCATCAGCCCTGCCCATCTGTCTCCACCCGGCGGGTATCCCCCCGGGGGCCAGCTGCTGGGTGTTGGGCTGGAAAGAACCCCAGGACCGAG
Seq C2 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAGGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-12-13,13-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093426=DUF1986=PD(38.5=92.6)
A:
NA
C2:
PF0008921=Trypsin=FE(20.2=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGCTCTACAACAGTGC
R:
CTCACACCTGTTCTCCTGCCC
Band lengths:
201-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)