HsaINT0132984 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31151615-31152078:-
Coord C1 exon
chr16:31151813-31152078
Coord A exon
chr16:31151737-31151812
Coord C2 exon
chr16:31151615-31151736
Length
76 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTTTGTCTCCTCTCCCCAGTCC
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCCAGGCTCTACAACAGTGCCTTACATTGAAGTGTATCTGGGCCGGGCAGGGGCCAGCTCCCTCCCACAGGGCCACCAGGTATCCCGCTTGGTCATCAGCATCCGGCTGCCCCAGCACCTGGGACTCAGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGGGTGGAGCCCTCCCCATCAGCCCTGCCCATCTGTCTCCACCCGGCGGGTATCCCCCCGGGGGCCAGCTGCTGGGTGTTGGGCTGGAAAGAACCCCAGGACCGAG
Seq A exon
GTGAGACCCCTGGGTCACGGGAACGAGGAGTAGCTGGAGGCCAGAGCCCTGGAACAACTTTGTCTCCTCTCCCCAG
Seq C2 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAGGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCCATCTGTCTCCA
R:
TGCATACAGGACACAGAGGGT
Band lengths:
182-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)