BtaINT0118741 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27493398-27493862:-
Coord C1 exon
chr25:27493597-27493862
Coord A exon
chr25:27493520-27493596
Coord C2 exon
chr25:27493398-27493519
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACCTTCCTTCCTGTCTCTAGTCC
3' ss Score
9.77
Exon sequences
Seq C1 exon
GCCGGGCTCTACAACGGTGCCTTATATTGAAGTGTACCTGGGCCGGGCGGGGGCCAGCCCCCTCCCCCAGAGCCACCAGGTGTCCCGGTTGGTCATCAGCATCCACTTGCCCCGGCATCTGGGACTGCGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGAGTGGAGCCCTCCCCATCGGCCTTGCCCATCTGCCTTCACCCTGGGGGTACCCCCCTGGGGGCCAGTTGCTGGGTACTGGGCTGGAAGGACCCCCAGGATAGAG
Seq A exon
GTGAGAGCCCTGGGTCCTGGGGACGAGAAGGGATAGGATGCCAGAATGCCTGGGACAACCTTCCTTCCTGTCTCTAG
Seq C2 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACTCCACGACTCTGTCACTGCCTCTATCAAGGCCTTCTGCCTCCTGGAACTCTGTGTGTCCTGTATGCAGAGGGGCAAGAGGACAGGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397:ENSBTAT00000055283:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCCATCTGCCTTCACC
R:
ACAGAGTTCCAGGAGGCAGAA
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]