MmuINT0127472 @ mm9
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135076885-135077346:-
Coord C1 exon
chr7:135077081-135077346
Coord A exon
chr7:135077007-135077080
Coord C2 exon
chr7:135076885-135077006
Length
74 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CAGTTCTCTCTCCTCTCTAGTTC
3' ss Score
8.06
Exon sequences
Seq C1 exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
Seq A exon
GTGAGAGTCCTTGGGTCATGGGAATAAGGAGTAACCTCGGGCCAGAACCCTTTACAGTTCTCTCTCCTCTCTAG
Seq C2 exon
TTCCTGTAGTTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCCGGGTATTCTGACTCCTGGGACCTTCTGTGTCCTCTATTCAGAGGGACAGGAGGATAGATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-Prss36:NM_001081374:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGAGCTGAACTCTCGGG
R:
AGTGACAGAGTCGTGGTGTCA
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: