MmuEX0037442 @ mm9
Exon Skipping
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135076152-135077346:-
Coord C1 exon
chr7:135077081-135077346
Coord A exon
chr7:135076885-135077006
Coord C2 exon
chr7:135076152-135076628
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAGTTCTCTCTCCTCTCTAGTTC
3' ss Score
8.06
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
GCTGGGCTCTACAACAGTGCCCTACATTGAAGTATATCTTGGCCGGGCAGGGGTCAGCTCCCTCCCACAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTGCCCCGGCACTTAGGACTTAGACCCCCCCTGGCTCTACTGGAGCTGAACTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGGGGGTATTCCTTCAGGGGCCAGCTGCTGGGTTTTGGGCTGGAAGAACCCACAGGACAGAG
Seq A exon
TTCCTGTAGTTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCCGGGTATTCTGACTCCTGGGACCTTCTGTGTCCTCTATTCAGAGGGACAGGAGGATAGATGTGAG
Seq C2 exon
GTCACCTCAGCACCTCCCCTCCTGTGCCAGACTGAGGAAGGTCCCTGGGTTCTCGTGGGCATGGCTGTTCGAGGAAACCGGGAGCTGTTTGCAGCCATTGGCCCTGAAGCTACATGGATATCGCAAACCGTGGGAGAAGCCCATTTTCTTCATCTCGGTGGCTCCTCCTACTGGTCTCCTGAAGGCAGTGACCTCTGCCCCCAAGACTTAGCAGGGTCTGCTAGCTCCCCTAAGGTCACTGCTCTGCTTCTGCTCCTCCTCCTGGCTCCACTGATCCCTCGCTGAGAGCCCGGCTCCTATTCACACCACCCATCAGGGCTGGAATGTGGCTCAACCGGCCAGCTCCCGGGCCTGAAGAGGGCCTCTTCCACCTCTACTGCATCAGCTTTCAGATAATTGGACCTCAGTGCTGGCTACTTTAAATCTAAGAATCCTTGGGGGTGGAGGAGGAACAGACAATAAAAATGTAAATACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-'16-21,'16-20,18-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.5=100)
A:
PF0008921=Trypsin=FE(20.0=100)
C2:
PF0008921=Trypsin=PD(14.0=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTCTTCCCATCTGCCT
R:
AGGAGCCACCGAGATGAAGAA
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: