RnoEX0070351 @ rn6
Exon Skipping
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199379566-199380554:-
Coord C1 exon
chr1:199380289-199380554
Coord A exon
chr1:199380093-199380214
Coord C2 exon
chr1:199379566-199379844
Length
122 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTCTCTCCTCTTTAGTTC
3' ss Score
7.92
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
Exon sequences
Seq C1 exon
GCTGGGCTCCTCAACAGTGCCTTACATTGACGTATATCTGGGCCTGGCAGGGGTCAGCTCCCTCCCTCAGGGCCACCAGGTATCTCGGTCTGTCGTCAGCATCCGTCTTCCTCGGCATTCTGGACTTAGACCCCCCCTGGCCCTGCTGGAGCTGAATTCTCGGGTGGAGCCCTCCCCATCAGCTCTTCCCATCTGCCTACACCCAGAGGGTGTTCCCCCAGGGGCCAGCTGCTGGGTTCTGGGCTGGAAGGACCCACAGAACAGAG
Seq A exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAGGGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGATGTGAG
Seq C2 exon
ATGACCTCAGCACCTCCCCTCCTGTGCCAGACTGAGGGAGGCCCTTGGGTTCTCGTGGGCATGGCTGTTCGAGGTAGCCGGGAGCTGTTTGCAGCCATTGGCCCTGAAGCAACCTGGATATCGCAAACAGTGGGAGAAGCCCATTTTCTTCATCTCGGTGGCTCCTCCTACTGGTCTCCTGAAGGCAGTGACCCGTGTCCCCAAGACTTGGCAGGATCTGCAAGCTCCCCTAAGGTTGCTGCTCTGCCCCTCCTACTGGCTCTACTGATCCCTCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343_MULTIEX1-9/9=8-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(44.7=100)
A:
PF0008921=Trypsin=FE(20.1=100)
C2:
PF0008921=Trypsin=PD(13.6=29.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGCTCTTCCCATCTGCCT
R:
AGGAGCCACCGAGATGAAGAA
Band lengths:
255-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]