RnoALTD0023744-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199379374-199380155:-
Coord C1 exon
chr1:199380098-199380155
Coord A exon
chr1:199380054-199380097
Coord C2 exon
chr1:199379374-199379844
Length
44 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
3' ss Seq
ATTTGGCTCCAATTCTGCAGATG
3' ss Score
7.37
Exon sequences
Seq C1 exon
GGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGAT
Seq A exon
GTGAGGTGCAGGGTCCCAGGGATCTTGGACCAGGGAGGCGAAAG
Seq C2 exon
ATGACCTCAGCACCTCCCCTCCTGTGCCAGACTGAGGGAGGCCCTTGGGTTCTCGTGGGCATGGCTGTTCGAGGTAGCCGGGAGCTGTTTGCAGCCATTGGCCCTGAAGCAACCTGGATATCGCAAACAGTGGGAGAAGCCCATTTTCTTCATCTCGGTGGCTCCTCCTACTGGTCTCCTGAAGGCAGTGACCCGTGTCCCCAAGACTTGGCAGGATCTGCAAGCTCCCCTAAGGTTGCTGCTCTGCCCCTCCTACTGGCTCTACTGATCCCTCGCTGAGAGCCTGGCTTCTCTTCATACCACCCATCAGGGTTGGAATGTGGCCCAACCAGCCAGCTCCCAGGCCTGGATAGGGCCTCTTCCACCCATACTGCATTAGCTTACAGATAATTGGACCTCAGTGCTGGCTACTTTGAATCTAAGAATCCTTGGGGGTGGAGGAGGAACAGACAATAAAGATGTAAATACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343-21-22,22-22,23-22-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(13.6=29.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTGACTCCTGGAACCTT
R:
CTACCTCGAACAGCCATGCC
Band lengths:
133-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]