RnoINT0118731 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199379566-199380214:-
Coord C1 exon
chr1:199380093-199380214
Coord A exon
chr1:199379845-199380092
Coord C2 exon
chr1:199379566-199379844
Length
248 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
3' ss Seq
ATTTGGCTCCAATTCTGCAGATG
3' ss Score
7.37
Exon sequences
Seq C1 exon
TTCCTGTAGCTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCAGGGCGCTCTGACTCCTGGAACCTTCTGTGTCTTCTATACTGAAGAGCAAGAGGATAGATGTGAG
Seq A exon
GTGCAGGGTCCCAGGGATCTTGGACCAGGGAGGCGAAAGGTAGTTCTGGGCAACTAGACCCAATTTGGATAGAATTGGAATCTCTTGGTATTGGGTTCCAGATAGGAACAAGTATTATTTCTGAGCTAGACCTTAGACCAGGACCCAGGATTCCTAAGGGTGAGATATGCAGTGCTTTGTGACCTGACCTTAGGGAAGGTAAGAGAGCCAGATGGAAGGGTAACACTCATTTGGCTCCAATTCTGCAG
Seq C2 exon
ATGACCTCAGCACCTCCCCTCCTGTGCCAGACTGAGGGAGGCCCTTGGGTTCTCGTGGGCATGGCTGTTCGAGGTAGCCGGGAGCTGTTTGCAGCCATTGGCCCTGAAGCAACCTGGATATCGCAAACAGTGGGAGAAGCCCATTTTCTTCATCTCGGTGGCTCCTCCTACTGGTCTCCTGAAGGCAGTGACCCGTGTCCCCAAGACTTGGCAGGATCTGCAAGCTCCCCTAAGGTTGCTGCTCTGCCCCTCCTACTGGCTCTACTGATCCCTCGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(13.6=29.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCAGGGCGCTCTGACTC
R:
ACCTTAGGGGAGCTTGCAGAT
Band lengths:
307-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]