MmuINT0127473 @ mm10
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127932638-127933492:-
Coord C1 exon
chr7:127933371-127933492
Coord A exon
chr7:127933115-127933370
Coord C2 exon
chr7:127932638-127933114
Length
256 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CCTTGGCTCCAACTCTGCAGGTC
3' ss Score
7.71
Exon sequences
Seq C1 exon
TTCCTGTAGTTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCCGGGTATTCTGACTCCTGGGACCTTCTGTGTCCTCTATTCAGAGGGACAGGAGGATAGATGTGAG
Seq A exon
GTACAGGGGCCTAGGGATCTTGGAGCGGGGAGAGGAAAAGTAGTTCTGGGCAACTAGACCCTATTTCGAATAGAAATGGAGTTCCTTGGTATGGGGTTCCAGATAGGATCAAGTATTATTTCGGAGCTAGACCTTAGAGAGACCAGAAACCAGGATTCCTAAGGGCGAGATATGCAGTGCTTTGTGATGGGTCTTTAGGGAAGAGAACCAGATGGAAGTGTGACAGACTCATTTGGCCTTGGCTCCAACTCTGCAG
Seq C2 exon
GTCACCTCAGCACCTCCCCTCCTGTGCCAGACTGAGGAAGGTCCCTGGGTTCTCGTGGGCATGGCTGTTCGAGGAAACCGGGAGCTGTTTGCAGCCATTGGCCCTGAAGCTACATGGATATCGCAAACCGTGGGAGAAGCCCATTTTCTTCATCTCGGTGGCTCCTCCTACTGGTCTCCTGAAGGCAGTGACCTCTGCCCCCAAGACTTAGCAGGGTCTGCTAGCTCCCCTAAGGTCACTGCTCTGCTTCTGCTCCTCCTCCTGGCTCCACTGATCCCTCGCTGAGAGCCCGGCTCCTATTCACACCACCCATCAGGGCTGGAATGTGGCTCAACCGGCCAGCTCCCGGGCCTGAAGAGGGCCTCTTCCACCTCTACTGCATCAGCTTTCAGATAATTGGACCTCAGTGCTGGCTACTTTAAATCTAAGAATCCTTGGGGGTGGAGGAGGAACAGACAATAAAAATGTAAATACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371:ENSMUST00000118755:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(14.0=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCCTGGGACCTTCTGTG
R:
GTGACCTTAGGGGAGCTAGCA
Band lengths:
295-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types