MmuINT0127473 @ mm9
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135076152-135077006:-
Coord C1 exon
chr7:135076885-135077006
Coord A exon
chr7:135076629-135076884
Coord C2 exon
chr7:135076152-135076628
Length
256 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CCTTGGCTCCAACTCTGCAGGTC
3' ss Score
7.71
Exon sequences
Seq C1 exon
TTCCTGTAGTTGCTGCTGTCTCCATCTTGACACCACGACTCTGTCACTGCCTCTATCCGGGTATTCTGACTCCTGGGACCTTCTGTGTCCTCTATTCAGAGGGACAGGAGGATAGATGTGAG
Seq A exon
GTACAGGGGCCTAGGGATCTTGGAGCGGGGAGAGGAAAAGTAGTTCTGGGCAACTAGACCCTATTTCGAATAGAAATGGAGTTCCTTGGTATGGGGTTCCAGATAGGATCAAGTATTATTTCGGAGCTAGACCTTAGAGAGACCAGAAACCAGGATTCCTAAGGGCGAGATATGCAGTGCTTTGTGATGGGTCTTTAGGGAAGAGAACCAGATGGAAGTGTGACAGACTCATTTGGCCTTGGCTCCAACTCTGCAG
Seq C2 exon
GTCACCTCAGCACCTCCCCTCCTGTGCCAGACTGAGGAAGGTCCCTGGGTTCTCGTGGGCATGGCTGTTCGAGGAAACCGGGAGCTGTTTGCAGCCATTGGCCCTGAAGCTACATGGATATCGCAAACCGTGGGAGAAGCCCATTTTCTTCATCTCGGTGGCTCCTCCTACTGGTCTCCTGAAGGCAGTGACCTCTGCCCCCAAGACTTAGCAGGGTCTGCTAGCTCCCCTAAGGTCACTGCTCTGCTTCTGCTCCTCCTCCTGGCTCCACTGATCCCTCGCTGAGAGCCCGGCTCCTATTCACACCACCCATCAGGGCTGGAATGTGGCTCAACCGGCCAGCTCCCGGGCCTGAAGAGGGCCTCTTCCACCTCTACTGCATCAGCTTTCAGATAATTGGACCTCAGTGCTGGCTACTTTAAATCTAAGAATCCTTGGGGGTGGAGGAGGAACAGACAATAAAAATGTAAATACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-Prss36:NM_001081374:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(14.0=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTCCTGGGACCTTCTGTG
R:
GTGACCTTAGGGGAGCTAGCA
Band lengths:
295-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: