HsaINT0132985 @ hg38
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31138925-31140415:-
Coord C1 exon
chr16:31140294-31140415
Coord A exon
chr16:31139417-31140293
Coord C2 exon
chr16:31138925-31139416
Length
877 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GCCTCGCTCCAACTCTGCAGATG
3' ss Score
8.05
Exon sequences
Seq C1 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAGGTGTGAG
Seq A exon
GTACAGGGGCCTGGGCGTCCTGGAGTAGGCAGGGGAGAGGCAGTGTTGGACTACTGTACCCTAGAGAGATAGCAGAATTGGAATTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCCCCCAGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCCCTGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCTACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTGAGCCAGGATGGTCTTGATCTGATCTCGTGATCCGCCGGCCTCGGCCTCCCAAAGTGCTGGGATTAGAGGTGTGAGCCACTGCGCCCGGCCAAGGAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGGTACCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAAGCATGCACCACCACACCTGGTTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAAGCTGGACTCAAACTCCTCACCTCAAATGATCCGCCCACCTTGGCTTCCCAAAGGGTTGGGATTAGAGGTGTGAGCCACTGCACCTGGCCAGGATTGGAATTATTGGGTATTTGGCCCCAAATGGGACCCTAGCTGGACCCGGGAGAGAAACCAGGGACCTGGATGTCTAGGGATGCAGACCAGAGTGCTTCGTGGCCAGACCCTGGGGAAAGGGGGAGGGGACCAAGAGGAAGGGCAGCAGACCCACGTGGCCTCGCTCCAACTCTGCAG
Seq C2 exon
ATGACCTCAGCACCGCCCCTCCTGTGCCAGATGACGGAAGGGTCCTGGATCCTCGTGGGCATGGCTGTTCAAGGGAGCCGGGAGCTGTTTGCTGCCATTGGTCCTGAAGAGGCCTGGATCTCCCAGACAGTGGGAGAGGCCAACTTCCTGCCCCCCAGTGGCTCCCCACACTGGCCCACTGGAGGCAGCAATCTCTGCCCCCCAGAACTGGCCAAGGCCTCGGGATCCCCGCATGCAGTCTACTTCCTGCTCCTGCTGACTCTCCTGATCCAGAGCTGAGGGGCTAGGGTCCCAGCACCACTTCCCCCTTCTCCACCCTCTACTTCCCGCCCAGTGGGGCTGGAATGTGGCCCAGCCGGCTGGAACCTCAAGGGCCCCACCCACCGAGATTGCAGCGGCTCTGGCTAATTGGGCCTCAGTGCCCGGGCTATTTTGAACCCAGGAATCCTTGGGGGTGGTGGGAGGAGCGGACAATAAAGGTGTAAACACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226:ENST00000268281:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(14.1=30.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCTATCAGGGCATCCT
R:
TGGATCAGGAGAGTCAGCAGG
Band lengths:
348-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development