BtaINT0118742 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27492856-27493519:-
Coord C1 exon
chr25:27493398-27493519
Coord A exon
chr25:27493135-27493397
Coord C2 exon
chr25:27492856-27493134
Length
263 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TCTTGGCCCTGATGCTGCAGGTG
3' ss Score
7.42
Exon sequences
Seq C1 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACTCCACGACTCTGTCACTGCCTCTATCAAGGCCTTCTGCCTCCTGGAACTCTGTGTGTCCTGTATGCAGAGGGGCAAGAGGACAGGTGTGAG
Seq A exon
GTATGGGGCCTGGGTATCCTGGCCGGGTCAGGGCAGAGGCTGTGCTGGGCAGCTGGACGCCAGGGAGAGAGCAGGGTGGGGCTTCTTAGGTGCTGGGTTTCAGATAGGAAGATGCAGTGCTTTCTGACTGGACCTCGGGAGAGACCAGGGGCCAAGATGCCTGAGGATGGAGAGGAACAGTGGTTTGTGACTGGGTCCTAGAAGGCGCAGGGGACCGGAAGGAAGAGTAAGGGCCCCTGTTGGTCTTGGCCCTGATGCTGCAG
Seq C2 exon
GTGACCTCAGCCCCTCCGCTCCTGTGCCAGACTGAGGGAGGCTCCTGGGTCCTCGTGGGCATGGCTGTTCGAGGCAGCCGGGAGCTGTTTGCTGCCACTGGCCCTGAAGAGGCCTGGATCTCCCAGACAGTGGGGGAGGCACCTTTTCTACCCCCCAGCGGCTTCCCCCACTGGCTCCCTGAAGGCAGCGACCTCTGTCCCCCTGACATGGCCAGGGCCTCAGGTTCCCCGCGGGCTGCTCTTTTCCTGCTGCTTCTGACCCCCCTGATCCAGGGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397:ENSBTAT00000055283:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.0=100)
A:
NA
C2:
PF0008921=Trypsin=PD(14.0=30.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCTGTATGCAGAGGGG
R:
GGGTCAGAAGCAGCAGGAAAA
Band lengths:
301-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]