HsaINT0132985 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31150248-31151736:-
Coord C1 exon
chr16:31151615-31151736
Coord A exon
chr16:31150738-31151614
Coord C2 exon
chr16:31150248-31150737
Length
877 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
GCCTCGCTCCAACTCTGCAGATG
3' ss Score
8.05
Exon sequences
Seq C1 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAGGTGTGAG
Seq A exon
GTACAGGGGCCTGGGCGTCCTGGAGTAGGCAGGGGAGAGGCAGTGTTGGACTACTGTACCCTAGAGAGATAGCAGAATTGGAATTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCCCCCAGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCCCTGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCACCCGCTACTACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTGAGCCAGGATGGTCTTGATCTGATCTCGTGATCCGCCGGCCTCGGCCTCCCAAAGTGCTGGGATTAGAGGTGTGAGCCACTGCGCCCGGCCAAGGAATTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACTGAGTCTCGCTCTGGTACCCAGGCTGGAGTGCAGTGGTGTGATCTTGGCTCACTGCAACCTCCACCTCCCAGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAAGCATGCACCACCACACCTGGTTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAAGCTGGACTCAAACTCCTCACCTCAAATGATCCGCCCACCTTGGCTTCCCAAAGGGTTGGGATTAGAGGTGTGAGCCACTGCACCTGGCCAGGATTGGAATTATTGGGTATTTGGCCCCAAATGGGACCCTAGCTGGACCCGGGAGAGAAACCAGGGACCTGGATGTCTAGGGATGCAGACCAGAGTGCTTCGTGGCCAGACCCTGGGGAAAGGGGGAGGGGACCAAGAGGAAGGGCAGCAGACCCACGTGGCCTCGCTCCAACTCTGCAG
Seq C2 exon
ATGACCTCAGCACCGCCCCTCCTGTGCCAGATGACGGAAGGGTCCTGGATCCTCGTGGGCATGGCTGTTCAAGGGAGCCGGGAGCTGTTTGCTGCCATTGGTCCTGAAGAGGCCTGGATCTCCCAGACAGTGGGAGAGGCCAACTTCCTGCCCCCCAGTGGCTCCCCACACTGGCCCACTGGAGGCAGCAATCTCTGCCCCCCAGAACTGGCCAAGGCCTCGGGATCCCCGCATGCAGTCTACTTCCTGCTCCTGCTGACTCTCCTGATCCAGAGCTGAGGGGCTAGGGTCCCAGCACCACTTCCCCCTTCTCCACCCTCTACTTCCCGCCCAGTGGGGCTGGAATGTGGCCCAGCCGGCTGGAACCTCAAGGGCCCCACCCACCGAGATTGCAGCGGCTCTGGCTAATTGGGCCTCAGTGCCCGGGCTATTTTGAACCCAGGAATCCTTGGGGGTGGTGGGAGGAGCGGACAATAAAGGTGTAAACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(14.1=30.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTCTATCAGGGCATCCT
R:
TGGATCAGGAGAGTCAGCAGG
Band lengths:
348-1225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)