HsaEX0050485 @ hg19
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31150251-31153281:-
Coord C1 exon
chr16:31153044-31153281
Coord A exon
chr16:31151615-31151736
Coord C2 exon
chr16:31150251-31150737
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTCTCCTCTCCCCAGTCC
3' ss Score
10.91
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AATGACTCGCGTTGGAGCCTTTTGTGCCAGGAGGAGGGGACCTGGTTTCTGGCTGGAATCAGAGACTTTCCCAGTGGCTGTCTACGTCCCCGAGCCTTCTTCCCTCTGCAGACTCATGGCCCATGGATCAGCCATGTGACTCGGGGAGCCTACCTGGAGGACCAGCTAGCCTGGGATTGGGGCCCTGATGGGGAGGAGACTGAGACACAGACTTGTCCCCCACACACAGAGCATGGTG
Seq A exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAGGTGTGAG
Seq C2 exon
ATGACCTCAGCACCGCCCCTCCTGTGCCAGATGACGGAAGGGTCCTGGATCCTCGTGGGCATGGCTGTTCAAGGGAGCCGGGAGCTGTTTGCTGCCATTGGTCCTGAAGAGGCCTGGATCTCCCAGACAGTGGGAGAGGCCAACTTCCTGCCCCCCAGTGGCTCCCCACACTGGCCCACTGGAGGCAGCAATCTCTGCCCCCCAGAACTGGCCAAGGCCTCGGGATCCCCGCATGCAGTCTACTTCCTGCTCCTGCTGACTCTCCTGATCCAGAGCTGAGGGGCTAGGGTCCCAGCACCACTTCCCCCTTCTCCACCCTCTACTTCCCGCCCAGTGGGGCTGGAATGTGGCCCAGCCGGCTGGAACCTCAAGGGCCCCACCCACCGAGATTGCAGCGGCTCTGGCTAATTGGGCCTCAGTGCCCGGGCTATTTTGAACCCAGGAATCCTTGGGGGTGGTGGGAGGAGCGGACAATAAAGGTGTAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.076
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(16.7=46.2)
A:
PF0008921=Trypsin=FE(20.2=100)
C2:
PF0008921=Trypsin=PD(14.1=30.1)


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGGGGAGGAGACTGAG
R:
CAGAGATTGCTGCCTCCAGTG
Band lengths:
252-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)