HsaALTD0005088-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31140294-31140734:-
Coord C1 exon
chr16:31140679-31140734
Coord A exon
chr16:31140492-31140678
Coord C2 exon
chr16:31140294-31140415
Length
187 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTTTGTCTCCTCTCCCCAGTCC
3' ss Score
10.91
Exon sequences
Seq C1 exon
ACATTGAAGTGTATCTGGGCCGGGCAGGGGCCAGCTCCCTCCCACAGGGCCACCAG
Seq A exon
GTATCCCGCTTGGTCATCAGCATCCGGCTGCCCCAGCACCTGGGACTCAGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGGGTGGAGCCCTCCCCATCAGCCCTGCCCATCTGTCTCCACCCGGCGGGTATCCCCCCGGGGGCCAGCTGCTGGGTGTTGGGCTGGAAAGAACCCCAGGACCGAG
Seq C2 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACACAACGAATCTGTGACTGCCTCTATCAGGGCATCCTGCCCCCTGGAACCCTCTGTGTCCTGTATGCAGAGGGGCAGGAGAACAGGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-20-21,21-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093426=DUF1986=PD(38.5=92.6)
A:
NA
C2:
PF0008921=Trypsin=FE(20.2=100)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGAAGTGTATCTGGGCCG
R:
CTCACACCTGTTCTCCTGCCC
Band lengths:
178-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development