BtaEX0028705 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27493398-27494267:-
Coord C1 exon
chr25:27494126-27494267
Coord A exon
chr25:27493597-27493862
Coord C2 exon
chr25:27493398-27493519
Length
266 bp
Sequences
Splice sites
3' ss Seq
CCTGGACCTTGTTTCTGCAGGCC
3' ss Score
9.09
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCTGTGGCTTGCAGCCAGAGCCGGCTCCGATGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTAGCCGGAGAGCGAGTCTGCGCTGGCGTCCTCGTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
Seq A exon
GCCGGGCTCTACAACGGTGCCTTATATTGAAGTGTACCTGGGCCGGGCGGGGGCCAGCCCCCTCCCCCAGAGCCACCAGGTGTCCCGGTTGGTCATCAGCATCCACTTGCCCCGGCATCTGGGACTGCGGCCCCCCCTGGCCCTCCTGGAGCTGAGCTCCCGAGTGGAGCCCTCCCCATCGGCCTTGCCCATCTGCCTTCACCCTGGGGGTACCCCCCTGGGGGCCAGTTGCTGGGTACTGGGCTGGAAGGACCCCCAGGATAGAG
Seq C2 exon
TCCCTGTGGCTGCTGCTGTCTCCATCTTGACTCCACGACTCTGTCACTGCCTCTATCAAGGCCTTCTGCCTCCTGGAACTCTGTGTGTCCTGTATGCAGAGGGGCAAGAGGACAGGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(20.5=85.4)
A:
PF0008921=Trypsin=FE(44.5=100)
C2:
PF0008921=Trypsin=FE(20.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCGGCTCCGATGG
R:
CTCACACCTGTCCTCTTGCCC
Band lengths:
249-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development