MmuINT0127470 @ mm10
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127934139-127934627:-
Coord C1 exon
chr7:127934390-127934627
Coord A exon
chr7:127934281-127934389
Coord C2 exon
chr7:127934139-127934280
Length
109 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
ACATGGCCGCCTCTCTCTAGCCT
3' ss Score
5.96
Exon sequences
Seq C1 exon
AAAGATTCCAGTTGGAGCCTTCTGTGCCGTGAGGAGGGGACCTGGTTCCTGGCAGGATACAGAACCCTCTCAGATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATGGTCCGTGGATCCGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGGGAGGAGACCGAGAAACAGACTTGTCCCACACATACTGAGCACGGTG
Seq A exon
GTGAGCAGGGGTCTGTGAGGCTTCAGGAGTTCCTGGTAATTCTTAGGTCCTGGCGAGATGTTTAGGGGGCAGCCTTGGGACTCCCTCTGACATGGCCGCCTCTCTCTAG
Seq C2 exon
CCTGTGGCCTAAGGCCAAAATCCACTCCAGCTGGTGTGTTGTGGCCCTGGCTGACGGAGGTGCATGTGACTGGTGATAGAGTCTGCACTGGGATTCTGGTGGCCCCAGGCTGGGTCCTAGCAGCCACTCACTGTATTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371:ENSMUST00000118755:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.213 A=NA C2=0.049
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(18.1=52.5)
A:
NA
C2:
PF0008921=Trypsin=PU(20.5=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTTTTCCCCAATGCAGA
R:
CACCAGAATCCCAGTGCAGAC
Band lengths:
248-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types