HsaINT1028210 @ hg38
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31141469-31141960:-
Coord C1 exon
chr16:31141723-31141960
Coord A exon
chr16:31141611-31141722
Coord C2 exon
chr16:31141469-31141610
Length
112 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TGGCCACCTCCTCTCCCTAGCCT
3' ss Score
7.66
Exon sequences
Seq C1 exon
AATGACTCGCGTTGGAGCCTTTTGTGCCAGGAGGAGGGGACCTGGTTTCTGGCTGGAATCAGAGACTTTCCCAGTGGCTGTCTACGTCCCCGAGCCTTCTTCCCTCTGCAGACTCATGGCCCATGGATCAGCCATGTGACTCGGGGAGCCTACCTGGAGGACCAGCTAGCCTGGGATTGGGGCCCTGATGGGGAGGAGACTGAGACACAGACTTGTCCCCCACACACAGAGCATGGTG
Seq A exon
GTGAGCAGGACGCTTTTGGGCCCTAGGGGCTCCTGGGAGTGCACAGACCCATGGCAGGGGCTCAGGGGTCAGCCATGGGGCCCCAACTGAGGTGGCCACCTCCTCTCCCTAG
Seq C2 exon
CCTGTGGCCTGCGGCTGGAGGCTGCTCCAGTGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTGGCTGGTGATCGAGTCTGCACTGGGATCCTCCTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226:ENST00000268281:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(16.7=46.2)
A:
NA
C2:
PF0008921=Trypsin=PU(19.7=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGTGGCTGTCTACG
R:
GACTCGATCACCAGCCACATG
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains