HsaINT0132982 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31152790-31153281:-
Coord C1 exon
chr16:31153044-31153281
Coord A exon
chr16:31152932-31153043
Coord C2 exon
chr16:31152790-31152931
Length
112 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TGGCCACCTCCTCTCCCTAGCCT
3' ss Score
7.66
Exon sequences
Seq C1 exon
AATGACTCGCGTTGGAGCCTTTTGTGCCAGGAGGAGGGGACCTGGTTTCTGGCTGGAATCAGAGACTTTCCCAGTGGCTGTCTACGTCCCCGAGCCTTCTTCCCTCTGCAGACTCATGGCCCATGGATCAGCCATGTGACTCGGGGAGCCTACCTGGAGGACCAGCTAGCCTGGGATTGGGGCCCTGATGGGGAGGAGACTGAGACACAGACTTGTCCCCCACACACAGAGCATGGTG
Seq A exon
GTGAGCAGGACGCTTTTGGGCCCTAGGGGCTCCTGGGAGTGCACAGACCCATGGCAGGGGCTCAGGGGTCAGCCATGGGGCCCCAACTGAGGTGGCCACCTCCTCTCCCTAG
Seq C2 exon
CCTGTGGCCTGCGGCTGGAGGCTGCTCCAGTGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTGGCTGGTGATCGAGTCTGCACTGGGATCCTCCTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(16.7=46.2)
A:
NA
C2:
PF0008921=Trypsin=PU(19.7=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCCAGTGGCTGTCTACG
R:
GACTCGATCACCAGCCACATG
Band lengths:
256-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)