RnoINT0118738 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199382498-199383217:-
Coord C1 exon
chr1:199383088-199383217
Coord A exon
chr1:199382737-199383087
Coord C2 exon
chr1:199382498-199382736
Length
351 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CAACCTCGCACCTCTGACAGCTC
3' ss Score
6.18
Exon sequences
Seq C1 exon
AGTGCGGGAAGGCTACGAGGCCCGGGACCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGCTCCACACCCTGCTATGGAGCTCTGGTGTCTGACAGCTGGGTCTTGGCACCCGCCAGCTGCTTTCTGGA
Seq A exon
GTGAGTGAGTGCGTGAGAATCCATACATCAGGCACTCTTTCTCCTTTCCCGCATCAGCCTGAAAGACTGGCTCAGCCCTTCCTCTGGGGTGGGAGTTGTACCTAGTTTGTAGTGTGAAGTCTTGGGAAATATAGAACCCAAACAAAGCCAGGGAATCTGACGAGGGCGGGGTAGGTGGTTCGGTCCAGAACTCGGGAACCAAAATAACAGAGTAGGGGCAGGGTTCCAGCGTTGGACATAGTATTCCAACCGGGAGATGCAGTCTAAGCCTGGAAAACTAGGTTTGCATCGAGTATGCGGAATGTGCACGCTCCTCAGCTTCCCCATCCAGCAACCTCGCACCTCTGACAG
Seq C2 exon
CTCTCTCCACGATTTCGAGACCTGGCGGGTGCTGCTGCCCTCGCGTCCGGAGGAGAAGAGGGTCGTGCGCCTCGTGGCGCACGAGAACGCTTCCAGGAACTTCGCTTCAGACCTGGCGCTACTGCAGCTGAGGACGCGCGTGAACCTGACTGCGGCTCCGAGTGCTGTGTGCCTGCCCCACCGCGAACACTATTTTCTGCCCGGGAGCCGCTGCCGCCTAGCTCGCTGGGGACACGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.5=97.7)
A:
NA
C2:
PF0008921=Trypsin=FE(36.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGCCCGGGACCT
R:
GTGTCCCCAGCGAGCTAGG
Band lengths:
353-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]