HsaINT0132992 @ hg19
Intron Retention
Gene
ENSG00000178226 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:26906]
Coordinates
chr16:31154058-31154792:-
Coord C1 exon
chr16:31154663-31154792
Coord A exon
chr16:31154315-31154662
Coord C2 exon
chr16:31154058-31154314
Length
348 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CCTCGGCCCCCATCCCGCAGCCC
3' ss Score
9.4
Exon sequences
Seq C1 exon
AGTGCGGGAAGGCCCCGCGGCCAGGGGCCTGGCCCTGGGAGGCCCAGGTGATGGTGCCAGGATCCAGACCCTGCCATGGGGCGCTGGTGTCTGAAAGCTGGGTCTTGGCACCTGCCAGCTGCTTTCTGGA
Seq A exon
GTGAGTGAAAATCTACGTTTCAAGCCGATCCTTGCCCCTCCCTACAGCCTGAGATACCATCCATTCGGCCCCAGCCCCTCCCCAGGGGGTGTGGGGGGGGCGGGGTCCCATTCGGAGGTGTAGGATCCAGCACAAAAAGAGGGGTCCTGGCCTGGCAGGGGTGGGTAGAGGCATGGTAGATAGAAGTTCGATCCCGGAGGCGGGGGTGTGAGTGAGCTGTTGGAATGGGGGTGTCGTGGGGATCCCGCCAGGATGCAGGATCCTCGCCTGGCAAGTCTAAGCCGGGGTGTGAGGTTTCCAGCCACGTGTGCGGGATCCGGCCCACGTCCCTCGGCCCCCATCCCGCAG
Seq C2 exon
CCCGAACAGCTCCGACAGCCCACCCCGCGACCTCGACGCCTGGCGCGTGCTGCTGCCCTCGCGCCCGCGCGCGGAGCGGGTGGCGCGCCTGGTGCAGCACGAGAACGCTTCGTGGGACAACGCCTCGGACCTGGCGCTGCTGCAGCTGCGCACGCCCGTGAACCTGAGCGCGGCTTCGCGGCCCGTGTGCCTACCCCACCCGGAACACTACTTCCTGCCCGGGAGCCGCTGCCGCCTGGCCCGCTGGGGCCGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-PRSS36:NM_173502:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.4=97.7)
A:
NA
C2:
PF0008921=Trypsin=FE(38.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGATGGTGCCAGGATC
R:
CTCCCGGGCAGGAAGTAGTG
Band lengths:
311-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)