MmuINT0127480 @ mm9
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135079279-135079968:-
Coord C1 exon
chr7:135079839-135079968
Coord A exon
chr7:135079551-135079838
Coord C2 exon
chr7:135079279-135079550
Length
288 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
GGAATGCACACGCTCCTCAGCTT
3' ss Score
0.46
Exon sequences
Seq C1 exon
AGTGCGGGAAGGCTCCGAGGCCGGGGACCTGGCCCTGGGAGGCCCAAGTGACCGTACCAGGCTCCACACCCTGCTATGGAGCTCTGGTGTCTGACAGATGGGTCTTGGCACCCGCCAGCTGCTTTCTGGA
Seq A exon
GTGAGTGAGAATCCATACATCGGGCACTCTTTCCCCTGGCTCAGTCCTTCCTCTGGGGTGAGAGTTGTACCTCAGTTTGTAGTGTGAAGTCGTAGGAAATATAGAATCCAACGTAAAGCCTGGGAGTCTGGCAAGGGCGGGTAGGTGGCTCTGTCCAGAACGCGAGAACCAGAATAACAGAGTAAGGGCGGGGTTCCAGTGTCGGACACAGTATTCCAACCCCGAGACGCAGTCTAAGCCTGGGAAGCTAGTTTTGCATCTAGTATGCGGAATGCACACGCTCCTCAG
Seq C2 exon
CTTCCCCACCCAGCAGCCCCGCACCTCTGACAGCTCACCCCACGATTTTGAGACCTGGCGGGTGCTGCTGCCCTCCCGTCCGGAGGAGGAGAGGGTGGCGCGCCTCGTGGCGCACGAGAACGCTTCCAGGGACTTCGCTTCGGACCTGGCGCTGCTGCAGCTGAGGACGCGCGTGAACCTGACCGCGGCCCCGAGTGCCGTGTGCCTGCCCCACCACGAACACTATTTTCTGCCCGGGAGCCACTGCCGCCTGGCTCGCTGGGGACGCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-Prss36:NM_001081374:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.165
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.5=97.7)
A:
NA
C2:
PF0008921=Trypsin=PU(43.0=76.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCTGGTGTCTGACAGA
R:
GCTCCCGGGCAGAAAATAGTG
Band lengths:
294-582
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: