RnoINT0118736 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199383325-199390395:-
Coord C1 exon
chr1:199390229-199390395
Coord A exon
chr1:199383575-199390228
Coord C2 exon
chr1:199383325-199383574
Length
6654 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTTGAGTCATCTATCATTAGGGT
3' ss Score
3.85
Exon sequences
Seq C1 exon
ACCCTCTGCCTGTCCCCTGGGTTCTACAGGAAGTAGAGCTAAAGTTGCTGGGAGAGACTGCCTGTCAATGTCTCTACAGTCGGCCTGGCCCTTTCAACCTGACTTTGCAGCTGTTGCCAGGAATGCTGTGTGCTGGCTATCCAGAGGGACGAAGGGACACCTGCCAG
Seq A exon
GTAAGGAGAGGTCTCCTAAGCCATAAGAAGCACCTAAGGAGTAGATGAAAATTTGAGCCTCATCTTCTATGGAATCTGGTCTGGGGAGTATGGCTCATGGTTATAGTATGTGCCTAGCACCTAGGAGGTGCTAGATTCAATCTCTGGCAACAAAACAAAAACCCAAAGACAGTCAGTAGTGCCTGGCATAGCAGGAAGCACTTGTAACCTCAGCACTTGGTAAGTAGAGGAGAGGCCAGGCTCAGGGCCTGTCTGAGCTACATAGTGGTCAGCCTAGGCTACATGAGACTGTATCTCACAACTGAACAGAAGCATCTCAATGAGTAGGACTGGCATAGAGATGATAGATGGATGGAAGCTAGGACTCAACATGTACCTGTTACCTTTGGGAGTCTGATGCAGTAAAGCCCCAGGTTCCCAAGGGCATGCATCCCATGAGGCAGGGGTTGTGGAGCCCAGATGAGGGCTAGTGAGAGAAGGAAGAAAGGACAGACACAGATACAGCAAAACTGGGGTTAGATTCCCACTACAGCAGAAACTTTGAGTTGTTCACCATGGCAAGGTTTAGCTAGTCTCAGCAGGAGATCCCATAGACCAGTAGTCTGGGACTGCAAACTTCTCAGAGGAAGCTGCAGTTACTAGTCTTTACACACACTGGTCAATTGTTTCGGACTCCTGAGTTGAGCCTCGCCAGCCATCTTGAGCATGGCCCACATGGGACACAGCTTTGCCAATATCTCATGGTTCCAAAGCCTTGGAGCCCTTGATCTGGCCTCATCCCTGTCAACAGTACACTCAGGACTCCGCTCGCTCAGGACGCCCTACACTCTCTTCACAAGTCCAGCACCACCAGCTCTTAGATATTCAACTTTGCTCAATGTTCAGACTCCATATCTGGAAGATGACAATAATACATCAAGTGTATTATTACCATAATTAATGACCTAAGATCTAAAAAACTATTAGCTATTATTTTTCTTATTCTAAAACCCAGCCTATAGCACAACACTTGTTGCTTAGTAGGTACCTAACATATAATTATTGGGAATAATAAAATTAATTCTTCACAGAGGGAATTTTCCAGATAATTGGCTGATGGCCAATACAGTATATTTGAAACAACTTTTTTGAGAAATTAACCCAGCATTCCTGGTAGGAGTGTGGATACGAAGTAGATAGTTCTGAGGTTCCAGGACCCATAGGCATATCAGTCTCCTAGAATTTTAGATTTTATTTATTTTATTTATGTGTATTTATTTTATTATTATTATTTACGTGTTTTACCTGATGAGTATTACATGTGTGCAGTGCCTGTAGAGGCCAGAGGAGGGCACCAGATTTCCTAAAACTGGAGGCATCTCTCCAGCTCTGATACTTGATTTCCCTCACCCTGAATATCTTTTATTGATTTTAGACAATTTCATACATGTATACAATGTACATTGATTATATCCACACGGAACTCCCCCCACTTCTCCTGGCGGATACCTGCAACACCCCTTCCACACCTACCTCTATATCGTCTCTTTATTTTTGCAAATTACTTGAGTCCAGTTAGCGCTGTGCTGAAATGCTGGCTGACTCCATTAGTTTGATGGTGTGGAGGTGTACTTGAGTGAGTACGATGACCACCTCTGCTGCGAGACAGCACTTCACACCACTGCCCCCCATGCTCTGGCTCCTCCTCTTCCCTGCTCCCTGGGAACATTCAGGGGGTGTTGATACACGTGTTCCACCTAGTGGTAAGCCCTCAGTGGTCACCTAGCCTCAGCACTCTGGCCAGTTATGTGTCTGCATTTAACTGATGCCCACTGCAGAGAGAAGCTTCCTGACCAAGGTCGAGAGCTGCACTGATCTCTGGGTGTAAACATAAATATTTAGAAGGCAGTTTAACAATATGTAGGAAAACAATAGTAGAGTAGTAGATTACCTGCTAGGGCCCATGACTCCATGGTTTACATTAGCAAGGAGAGAATCCTTCCTGTGGATTCCTCAGATAGCCAATCAGAAAGCAGGCGGTTACGTCCATGACCTCCACACCACTGTTTATCATGGGCACATCTTGCTTGTCAGGTTCATATTGTAGCATTCAGGAGTCACTGTTGGGCAATAGTATTGATGGCTCAGATGCCCCACCAGGTTCCATAGCACTTCCACAGCACTGTGAAAGCCGGCCACCAGGGAAGAAGTTTTCTGGTTGGTTCCAGGTTAATTTCTCTGTATGCTGCAACTGAAGTGTGTTGTTTCTGCAATAGTCTTACCGTCTATGGTTGGCAATCAAGAGTAATGGCAACAGTCTGTGTTGTTTTGGGAGCCTCTGAGGCTTCCCTGACCAACAACTCATAAGGAGCTGTTCCTATAGCTCAGTGTGCCATGCTTGACACTGAGATTTTGATTTAATAGTGTAAGGCTTATTGGGGAAGCACTGTCCACATGTATTCAAACTCCTTTTAAAATTACAGATATACACACACATATACTTTTTTTTTTTTTTGACAGTGTCTTACTACATATTCTTGGCTGGCCTAGAACAATCACTCTTCTAGAACAAGCTGTTATATTCTTATATATGTGTTCCCATAAAGGTTTTCTGTATACCTTTAGTTTTGATTAACTTACCCCACGTTCTCCTTTCTCCTGTCCCCCCATCCCTATCCCAACTTAACCCTTCAATCCCCCAGTACCCTCCCATTTTATTTTTCTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCATACCCTCCCATTTTTATAGCACATGTGTTCTTCTAGGCCCTCACCCCTTCAGGCTTCTTCCCTCCCTCTCATGAACCTGTTCAAGCTTCCTGACTACTACGGCCATTCTAAATTAAACATAGCAATGTAGACATTTGAAGCTCAGATCTATAGGTGAGAAAGAATGAGTGTCACTTATCTTTTCTGAGCTTGCACGGCCTCACTTTGTATAGTATTTTGCTGTTCCACCCACTTTCCTGCGAATTTTATTTATTTATTTATTTATTTTATTTATTTATTTAATGTAAGTGAGTACACTGTCACTCTCTTCAGACACACCAGGAGAGGGCATCAGATCTCATCACAGATGGTTGTGAGCCACCATGTGGCTGCTGGGACCTGAACTCAGGTCCTCAGGAAAAGCAGTCAGTGCCCTCAACCGCCGAGCCATCTCTCCAGCCCCAAGGTGGTCCCTTTTTTGATTGGGTAGTGTATTCTCCTTATGTGTAGCTTCTTGAGTTCTTTGACTATCCCTTGGCTGTGGTGTTCATTGAACTTTCTGAGGATGGTTCTCACTGTCCAGCTTGACAGCTCGAGTGCCACTCCTGGACCCACAGGGTGAAGAGAGCTGAGTATTGAGTGTTGCTCTTTGACCTCTACTCCCTGGCCATGGCACTTGAGCACACACAATAAATAAATTAATAAATAGAAATCTAGAAAGAGAAAGCCAGACATTGTGGCATATGTGTGTAATCTGCACTCAGGAGGCAGAGGGTGGCAGATCCTAGAGGTCAAGGCCAGCTAGATCTATATAGTAAGACCCTGTCCTAAAAATGGAAAATGTTACTTGCTCAGTACAATAGCTGCTAGTCATATCTATCTATTGGGCATGTGAAATGTGTGTGAAAGGGAAAAATAAAGGAAGGTAAAGCTGCACATGGAGTCCCAGGCTGTAATCCTAGCACTTGGAAGACTGAGGCATAAGATCACAAGTTCAAGGCCATGCTGAACTATATAGCAAGACCTTGTTGGGGTGGTTGAGCAGGGACAGAAGGCAGGAAGACAGGTAGGTCTTACCTCAGAAACCTGGCAACCCAAGTCTCATCCCTGGAACTAAAGGTGGAAGAAGAGAGACAACCATAGTTATTCTCTGATGTCCACACGTGTGCTGTAGACCCATGCTCCTCCCACAACACATAATAATGATAAAATGCAAAATAAGTAAATAAATTTTGATAAAAAGGAGTCCATGAGATAGTTCAGAGGGGATAAGTGTTTGCCACACAAGTGGCTTAAGTTCAATTCCTGGAACCTCAGACACATTCTCCCTCTCCTTCTCTTCTTCTCCAGCAACAAAAAAAGAGGACAGGGAGAAGGAAGCACTGGGGGCATAGTTCAGGTGTAGAGTGCTTAGTGCAGCCAGCACCACAGCTATGGTGTGTGCGCCTATAGCTCCGGAACTCACGAATGAGGCAGTAGAAGCAGAAGGACCAAATTCAGCGACACTGTGACTCTGAAGCCAGCCGGGGCTCCATGAGACCTATCTCAACTAAAACAAAACAGAGGGAGGAAGGGGGCTGGTGGCCTGAGAAATTAAAACCGAATCTAAACTTAAATGATCAGAGCAGAAGGGCTGTCTGTGGTTAAGAGCATTTGCTGCCCTTGCAGAGGGCCAGAGTTCAATTTCCAGGACCATTACAACCTCTGCAACTCCAGTTCCAGGGATCCAACCCACTTTTCTGACCGCCACAGACACCACACACACTTATGGTACACAAAAATACATGTAGGCAAAACATACATCACAATCATAAAACACTGAAATCAATCTTAAAAAACATAGTTGCTTTGGGCTGCTAACTACTATTTTGGGTAGCATAGCTCTACAAAATGTTGAGCCTTCTTGTTTTAATGTTTTATTCATTTAATTAATGTACATTTGATGTTTTGCCTTTATGTATGTCTGTGTGAGGGCAGCAGATCCCCTGGAACCAGAGTTATAGACAGTTGGGAGTTGCTATATGGATGTTGGAAATCGAACCTGGGTCCTCTGGAAGAACAGACAGTGAGTGAGTGCTCTTAACCTCTGAACCATCTCTCCCAGCCACTCTTAAACACGTTTAGAATTTATTTTCTATGTATCAGTGTTTGCCGGCATGTATGTCTGTGCATGACTGGTGCACAAGGCCATCAGAAGAGGGTATCAGATTCCCTGGAACTGTAGTTACAGATAATTGGGTCCTGTGGGAAGAGTAGCCAGTGCTCTTTACCACCGGCTGCAGACTTTGTGACTCCTGAGCTGGGTTACAGAACAGACACCACAGGGTAACATGGCCCACTCCAGTCGTTTGTGTGTCTGCTGATGTTACTCTTCCTCATTTGGCTTCACACTCCCATTCTTTTTTTTTTTTTAAAGATTTATTTATTTCATGTATCGAGTACATTGTAGCTGTTTTCACACACACCAGAAGAGGGCATCAGATCACACTACAGATGGTTGTGGGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTCAGGAAGAGCAGTTAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCACACTCCCCATTCTTAATATATTTATTTGTTTGCTCATTTATCCATCATTCATAACCAGGATCTTTCTGTTGCCCAAGGTGGGCTTTGACTCCTGAACTTAAGTGACCCTCCGGCCTCAGCCTCTCGAATAGCAGCGGTGTACAGATACAGCACCGTACATGCTCTCGGAGCTAGCATATTTACCTAGTTCTACCTGGGGCTTCAGCTAGTACCTCTCATTTGTTTTTACATTTATTTATTGTGTGTGCGTTTCAATATGGCCTTTAGCCATTTTTTGTTTATTTGTTTGGAGACAGTCTCATGGAGCTCAGGTTAGCCTAAGAGTAACTGTCAGTGAGTCCTGATCCTTTCACCTCCCAAGTGTTAGGACTATAGGTATGCACCTTGGCTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGGTGTGCAGGCAGAGGACAACCTCCGGTGTCATTAGGCATACAGTCTACCTCCTTTAAGACAGGGTCTCTCATTGGCCATGGGCTCACCAATTACGCTAGACTGGCTGTCTAGGCCTCTCTATAGATCTACAAGCTCAGGTCACACTTTTACATGGGTTACGGAGTTGGAACTTGGGTCTTTAAATTTGCAAGGCAAGCATTTTCCCAGGTGAGCAATGCCCCTCAGTACTTGATTTATTTACTTACTTATTAATTCATTTATTCATTTATTTTCGAAACTGAACTGGAATTCACTTTGTAGTTCAAGTTGGCCTTGACCTCAGAGATCTGTCTACTTCCTCCCGAGTGCTAGGATTAAAAGTGTACAACACCACCTCCAGGCTTCCTCAATATACTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCAAATCCAGGGCCTTGCGCTTAAGCGCTCTGCTACTGAGCTAAATCCCCAACCCCCTCAATATACTTTTTAAAGGGGCAGAGGTCGGCATTTATGAGACCCTGGAGTCAAACCCAGCCCAAAACTAAACTTTGGAAGCTGCAATTCACAAACCTTAGAAATCAGGGACAGTTTGGGGGTGACCTATTTACAAGACTCATTCAGCTCCGAATGAGACTGGCGGGATTCTCTTGAGCAGCCATTGGTGCCTTGACTGGATGCTCTCGGTTGGCTTTGGCTTTACCAGGCTTTCTTCTAATTGAGTTGTAGCTAACACAGAGGTGAAGATAGCTACGGAAGGTTTCTAGAAGGTGGCTGGCTGTATGTTAGGCTGAAACGGGGTGGGAATTTTTGAACTAACCTCTGACTTGAGTCATCTATCATTAG
Seq C2 exon
GGTGACTCTGGGGGACCGTTGGTCTGTGAGGATGGCGGCCGATGGTTCCTGGCGGGAATCACCAGCTTTGGCTTTGGCTGTGGACGGAGGAACCGCCCTGGGGTCTTCACTGCAGTGGCTCACTATGAGTCATGGATTCGGGAACACGTGATGGGTTCAGAACCTGGGCCTGCCTTTCCCAGCCAGCTCCAGAAGCCCCCGTCAGAACCCTGGGAGCCCAGAGAAGAAAACTGTACCTTTGCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.252
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(22.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=53.6),PF0008921=Trypsin=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]