GgaINT1009324 @ galGal4
Intron Retention
Gene
ENSGALG00000027497 | CFD
Description
complement factor D (adipsin) [Source:HGNC Symbol;Acc:HGNC:2771]
Coordinates
chr28:2752255-2753071:+
Coord C1 exon
chr28:2752255-2752512
Coord A exon
chr28:2752513-2752733
Coord C2 exon
chr28:2752734-2753071
Length
221 bp
Sequences
Splice sites
5' ss Seq
AAGGTCGGA
5' ss Score
4.85
3' ss Seq
AATGAGTTTTGTCCCCACAGGGT
3' ss Score
9.11
Exon sequences
Seq C1 exon
CTGGAGGAGAAAGCGGAGCTGAACGAACACGTGCAGCCGCTGCCGTTCCAACGCGAGGACCGGGAGGTGGCGGCCGACACGCTTTGCAGCGCCGCGGGATGGGGGACGGTGACGCACAGCGGGAAGCGGCCGGATCGGCTGCAGGAGGTGCAACGCCCGGTGATCAGCAGAGAGCTCTGCAACCACCGCACCCGCCACGACCGCACCATCACCGAGAAGATGATGTGCACCGACTCCCGCAAGAAGGACACGTGCAAG
Seq A exon
GTCGGAGCCCTGGGGGGTGATGACCCCATGCGGGGCCCGGGGGAGGAGTGGGAAGGATGCTGGGGAAAGGGGGAGGGTGTGGGGTGGGATGGGGTTGCATCCCTGCTGGGATCCCTACACCCCCAGGCGTGGGTGAGAAGAGGGGTGAGGGTTGGCAGGGAGGACCCTGGATCCAAAGCTGCAGCCCGAGAGCCACGTGGCAATGAGTTTTGTCCCCACAG
Seq C2 exon
GGTGACTCCGGGGGTCCTTTGGTCTGCAACGGTGTGGCTGAAGGGGTGGTGACGGCCGGCTCTCGTGTCTGCGGCAACTACAAGAAGCCGGCCATCTACACCCGCATCGCACCCTATGCTGAGTGGATTGATGGTGTGATGGCCTCCAGGGATGGGGATGTGGGCACCCGTTGAGCCCACACCGCTGGGCACAGAGGGGATGGGGACCCTGAGCTCATGGAGTGGGGGTTTGGGGGGGCTGAGCGACGCCCCGGGGAGGGGGAGGCACTGCTGCAGGCTTTGCTGGACACATCTGTATTGCAACCACCACAATAAAGCAACAGCAATTGCTGCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027497:ENSGALT00000044292:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=72.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACCATCACCGAGAAGATG
R:
CCCCAAACCCCCACTCCAT
Band lengths:
292-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]