BtaINT0037441 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048122 | CFD
Description
Bos taurus complement factor D (adipsin) (CFD), mRNA. [Source:RefSeq mRNA;Acc:NM_001034255]
Coordinates
chr7:45031490-45032845:+
Coord C1 exon
chr7:45031490-45031747
Coord A exon
chr7:45031748-45032626
Coord C2 exon
chr7:45032627-45032845
Length
879 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
CACGACCCTGCTCCCCGCAGGGC
3' ss Score
9.9
Exon sequences
Seq C1 exon
CTCTCTGAGAAAGCCGTGCTGGGCCCTGCCGTGCAGCTCCTGCCATGGCAGCGCGAAGATCGCGACGTGGCTGCGGGCACTCTCTGCGACGTGGCGGGCTGGGGCGTGGTCAGCCACACCGGCCGGAAACCCGACCGCCTGCAGCACCTACTCCTGCCGGTGCTCGACCGCGCCACCTGCAACCTGCGAACGTATCACGACGGCACCATCACTGAGCGAATGATGTGCGCGGAGAGCAACCGCCGGGACACCTGCAAG
Seq A exon
GTGCGCAGGCGGGGCGGGACGGAGAGGGTACCAGCCTGCTGGGGTTGGGGCCTGTAGAGGGGCGGGGCAGCGGGGCAGATCTACTGTGGGTGGGGGCAGTAGAGGGGCGGGACAGACAGGGGACCAGCCTGTTGGGGGTGGGTCCAGGAGAGGGGCGGGGCGCCCTGGGGACGGGGCAGAGAAGGGCAGGTATGTTGGAGGGCGGGGCCAGCAGAAGGGCAGCGCACGTGGACAGGCCGGACGGGCACGGCTGGCCTGAGGACAAAAAAGGGTTGGGAGGAGAGGTGACAACTGGGAGAGGATGTGGATGCGTTGGGACCCGAGCTTGAAGGCTTCGAGGGGCTGCTGCGCAGAGACTGGGACGGAGGGCGGGAGTGGAGCTTGAAGTGGCGGAACCGAAAATCCGGAGGCGAGGCCTTGACGGGCGGCGGTGGGTGGACCCTGGGGAAACTGAACAGTGAGGGAATGATTGGGGCCTCAGGGCTGAGCGGAATTGCAACAGGCTGGAACTGCAGCAGGCTCTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCAGAGACGGCAGCCCACGAGGCTTCCCCATCCCTGGGGTTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCTTTCTCCAATGCATGAAAGTGGAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTTTGTCCATGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGGCAGCAGGCTCTAGTGGAGCCGAACCAGGATGCGGGAGGGCGGGCCTGTACCGTACCTCACGACCCTGCTCCCCGCAG
Seq C2 exon
GGCGACTCCGGAGGCCCGCTGGTGTGCGGCAGCGTGGCCGAGGGCGTGGTCACCTCGGGTTCACGGATCTGCGGCAACCACAAGAAGCCCGGTATCTACACGCGCTTGGCGAGCTACGTGGCCTGGATCGACGGCGTCATGGCTGAGGGCGCAGCCGCCTGAGGAGGCCCTGAGAGGCTGCGGTCACGGGGCCCGAGCAATAAAATCATCCATTCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048122:ENSBTAT00000063284:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGAGAAAGCCGTGCTG
R:
AGATACCGGGCTTCTTGTGGT
Band lengths:
355-1234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]