RnoINT0035382 @ rn6
Intron Retention
Gene
ENSRNOG00000033564 | Cfd
Description
complement factor D [Source:RGD Symbol;Acc:2498]
Coordinates
chr7:12634216-12634852:-
Coord C1 exon
chr7:12634595-12634852
Coord A exon
chr7:12634434-12634594
Coord C2 exon
chr7:12634216-12634433
Length
161 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
CTTGTGGCCCCGCCCCACAGGGC
3' ss Score
9.31
Exon sequences
Seq C1 exon
CTCTCCCACAATGCCTCACTGGGTCCCCATGTGAGACCCCTGCCCTTGCAACGCGAGGACCGGGAGGTGAAACCCGGCACGCTCTGCGATGTGGCCGGTTGGGGCGTGGTCACTCATGCGGGACGCAGGCCCGATGTCCTGCAGCAACTGACAGTGTCAATCATGGACCGGAACACCTGCAATCTGCGCACGTACCATGATAGGGCAATCACCAAGAACATGATGTGTGCAGAGAGCAACCGCAGGGACACTTGCAGG
Seq A exon
GTGAGGGGCACAGCCTGGGTCACGTGGTGTGGGTGGGTGGAGTTGAGGGACTGTGGAGGCTACTGAGGGGCGTGGGTTGTGGGAAGGGCGGAGTTCGGGAATCTCAGGAACTTTTTTGCTGGCTATTGGGTGGGCATGTCACTTGTGGCCCCGCCCCACAG
Seq C2 exon
GGCGACTCCGGCGGTCCTCTGGTGTGCGGGGATGCGGTCGAAGCTGTGGTTACGTGGGGATCTCGAGTCTGTGGCAACCGGAGAAAGCCAGGTGTCTTTACCCGCGTGGCAACCTACGTGCCGTGGATTGAAAACGTTCTGAGTGGTAACGTGAGTGTTAACGTGACGGCCTGAGGGGACACCGGAGACCGTGACTCACAATAAATGCATGCATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033564:ENSRNOT00000015029:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.8=72.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCACGTACCATGATAGG
R:
CAGGCCGTCACGTTAACACTC
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]