GgaINT0144936 @ galGal3
Intron Retention
Gene
ENSGALG00000015192 | F1NTI2_CHICK
Description
NA
Coordinates
chr28:2555024-2555516:-
Coord C1 exon
chr28:2555268-2555516
Coord A exon
chr28:2555180-2555267
Coord C2 exon
chr28:2555024-2555179
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
3' ss Seq
CGTCACCGTCGCTCCCATAGGGT
3' ss Score
9.63
Exon sequences
Seq C1 exon
CTGGAGGGGAAGGTGAAGCGCAGCAAAAGGCAGCGACCCATCGCGCTGCTGCGGCGGGAGCCGGCGGTGGGCACCGTGTGCAGCCTGGCGGGCTGGGGCGGGCGGAGGGGGCTGAAGGCCGCCCTGCAGGAGCTGGAGGTGGCCGTGCTGGACACGAGGATGTGCAACAACAGCCGCTTCTGGAACGGCGACCTCACACCCAGCATGATCTGCTTCGAGGGCCGCGGCCGCGGCGAAGCGCCCACCAGT
Seq A exon
GTGAGGAGATGGGGGGGGGGGTGAGGGGGGCTTCGTGCGGGGCTGTGCTGCCTCGTGCCAGGCTGTGCCGTCACCGTCGCTCCCATAG
Seq C2 exon
GGTGACTCCGGGAGCCCCCTGGTGTGCGGGCGCCCGGCGGCGGTGGCGGGCGTGATGTCCTTCTCCAGCCGCAACCCCACTGACCCCCTAAAGCCCCCCGTGGCCACCTCGGCAGTGAAGCACCACTTAAGGGTCCGGCGCACGCTGCGGCGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015192:ENSGALT00000024511:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.673
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(38.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.2=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACAGCCGCTTCTGGAA
R:
CTTTAGGGGGTCAGTGGGGTT
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]