MmuINT0075467 @ mm10
Intron Retention
Gene
ENSMUSG00000054206 | Gzmm
Description
granzyme M (lymphocyte met-ase 1) [Source:MGI Symbol;Acc:MGI:99549]
Coordinates
chr10:79694351-79695261:+
Coord C1 exon
chr10:79694351-79694617
Coord A exon
chr10:79694618-79694986
Coord C2 exon
chr10:79694987-79695261
Length
369 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTGTCCCTCACCTCATGCAGGGT
3' ss Score
7.75
Exon sequences
Seq C1 exon
CTAGATAGACGAGTGCAGCCCAGCAAGAATGTCAAACCACTAGCTCTGCCAAGAAAGCCCCGATCCAAGCCGGCAGAAGGTACCTGGTGCAGCACAGCTGGCTGGGGAATGACCCACCAGGGTGGGCCCCGGGCCAGGGCCCTGCAGGAGTTGGATCTGCGTGTGCTGGATACCCAAATGTGTAACAACAGCCGCTTCTGGAACGGTGTCCTCATAGACAGCATGCTATGCTTAAAGGCTGGGAGCAAGAGCCAAGCCCCCTGCAAG
Seq A exon
GTGAGAAGGATGGCCTGTAGGCTTGGCCTGGACAGCTGCCCCAACCAGCCTCTGACACCCTGGGGAGTGGAAGGAGGGTGGGACTAACATTCACCTCACTTCTCAGACACGGAAACTGGGAGGGTAAAATACCCGTGTCTAGGTTGGAAGTCAGGAAGCCGGAGAATTGTGGTTTGAAATCCAGTACCATAGATTAGGCATCTGGGCCTAGAGCAAAGGCCCTGGGGTACAAAGAGGAGAGAGAAGGGAAAGGAAGAGGGAAAGAGACAGGAAGGCAAGGGTGCTTACAAGAGGCCCCAGCACCTCCCAGGCCCCTGTTCCCCAACTGCAGGCACAAAGGCTGACTTGTGTGTCCCTCACCTCATGCAG
Seq C2 exon
GGTGACTCTGGAGGGCCCCTGGTGTGTGGCAAAGGCCAGGTGGATGGGATCCTGTCTTTCAGCTCCAAAACCTGCACAGACATCTTCAAGCCACCTGTGGCCACTGCTGTAGCCCCCTACAGCTCCTGGATCAGGAAGGTCATTGGTCGCTGGTCACCCCAATCTTTGGTCTGATGTCCCAGATCATCTGGGACACCATTCTTGATAGCGGGGGCTGGGAAGGGACTAGGTGTGCCTCTGAGGACCAATAAATCCTGATATATCTGTTGAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054206:ENSMUST00000020549:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.1=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAAGCCCCGATCCAAG
R:
CTGATCCAGGAGCTGTAGGGG
Band lengths:
353-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types