GgaINT1014478 @ galGal4
Intron Retention
Gene
ENSGALG00000015192 | GZMM
Description
granzyme M (lymphocyte met-ase 1) [Source:HGNC Symbol;Acc:HGNC:4712]
Coordinates
chr28:3114497-3115028:-
Coord C1 exon
chr28:3114780-3115028
Coord A exon
chr28:3114692-3114779
Coord C2 exon
chr28:3114497-3114691
Length
88 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGG
5' ss Score
2.87
3' ss Seq
CGTCACCGTCGCTCCCATAGGGT
3' ss Score
9.63
Exon sequences
Seq C1 exon
CTGGAGGGGAAGGTGAAGCGCAGCAAAAGGCAGCGACCCATCGCGCTGCTGCGGCGGGAGCCGGCGGTGGGCACCGTGTGCAGCCTGGCGGGCTGGGGCGGGCGGAGGGGGCTGAAGGCCGCCCTGCAGGAGCTGGAGGTGGCCGTGCTGGACACGAGGATGTGCAACAACAGCCGCTTCTGGAACGGCGACCTCACACCCAGCATGATCTGCTTCGAGGGCCGCGGCCGCGGCGAAGCGCCCACCAGT
Seq A exon
GTGAGGAGATGGGGGGGGGGGTGAGGGGGGCTTCGTGCGGGGCTGTGCTGCCTCGTGCCAGGCTGTGCCGTCACCGTCGCTCCCATAG
Seq C2 exon
GGTGACTCCGGGAGCCCCCTGGTGTGCGGGCGCCCGGCGGCGGTGGCGGGCGTGATGTCCTTCTCCAGCCGCAACCCCACTGACCCCCTCAAGCCCCCCGTGGCCACCTCGGCAGTGAAGCACCACGCGTGGATCCGGCGCACGCTGCGGCGCGGCTGCGCGGCACAGACGGAGCAGCCCCAGCTATTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015192:ENSGALT00000024511:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.662
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.9=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.8=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACGAGGATGTGCAACAA
R:
GCTGGAGAAGGACATCACGC
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]