RnoINT0118727 @ rn6
Intron Retention
Gene
ENSRNOG00000033343 | Prss36
Description
serine protease 36 [Source:RGD Symbol;Acc:1593186]
Coordinates
chr1:199381113-199382409:-
Coord C1 exon
chr1:199382246-199382409
Coord A exon
chr1:199381351-199382245
Coord C2 exon
chr1:199381113-199381350
Length
895 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
ATAATACTGTTTTGCTGCAGAAA
3' ss Score
8.49
Exon sequences
Seq C1 exon
AACCTGCACCACGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACAGCTGGTGGTGTCACTGCCTGTACGGCCGCCAGGGGGAGTCCGTGCCGCCGCCAGGAGACCCGCCGCACTTGCTTTGCCCCGCCTACCAGGAGGAGGAAGAGGCGGGTGCTTGCTGG
Seq A exon
GTGAGCGGCAGGAACTCGCTGCGGAAATCCGGTCCTGACCAGGACCCAGCTGGAGGCGGGAGGAGCTAAGATGGGGCGGGGCGTTTTGGGCTCCGCGTGGTGCCAGAACTATTATTTCTATTCTTCTTCTTTTTTTTTTCCATTTCTTTCTTTCTTTTTTTTCTCCCCCGAGACAGGCTTTCTCTTTGTATCCATAGCTGTCTTAGAACTCACTGTTTAGGGGCTGGAGGAATGGCTCACTGGTTAAGTGCACCGATTACTCTTCAGTTCAATTCCCAGCACGTACATGGGGAGCTCACAACTGTCTGTAACTCCAATATCTAACACCCTCACATAGGCATTCATGCAGGCAAAACACCAATGCACATAAAATAAAATACATAAAATTTTAAAAATTTAAAAAGCTTTTTGAAAACCAGGCTGGCCTTGAACAAATTCAGAGATCCTCTTGAATGTGCACCACTATGCCCAGCTTCTTCCTTCTTTTTAAAAATACGATATTGGGATCCAAGCCCGGATCCTTGTAAACCAAGTGCTTTACCGACTAAGCCATCTCCTCAACCTGAGCTTGTCAGTTTTAAGAGAGGGTTGAAACCAAGTGCACTGCTTCTTTAATCCTAAAACTCAGGAGGCAGAGGGTGATCTCAGAATTTGAGGACAGCCAGGGCTACACAGAAAAACCCTGTCTTGAAAATAAATGGGGGGAGGGAGTTAGGGGAGAAGGTATTTGGGCTTGCCAAGTGAAGGCTGGAGCTTTACACAAATCAGTGTTGAAACTTGGCTTAAAGGATTCATGCAGGAAAGGAGAATCAAGATCCCAGGAAAGTCCAGGAAGCCTAGGATCTATAGGCCTGCAGCCTGCACTCATACAAATAATAATACTGTTTTGCTGCAG
Seq C2 exon
AAAGATTCTGGTTGGAGCCTTCTGTGTCGTGAGGAGGGGACGTGGTTCCTGGCTGGATACAGAACCCTCTCAAATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATGGGCTATGGATCAGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGAGAGGAGACTGAGAAACAGACATGTCCCCCACACACTGAGCATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033343:ENSRNOT00000026587:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.4=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGTCACTGCCTGTA
R:
TCAGTGTGTGGGGGACATGTC
Band lengths:
345-1240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]