BtaINT0118738 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27494380-27495043:-
Coord C1 exon
chr25:27494880-27495043
Coord A exon
chr25:27494618-27494879
Coord C2 exon
chr25:27494380-27494617
Length
262 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CACACACCCTCTTGCTACAGAAC
3' ss Score
7.9
Exon sequences
Seq C1 exon
AACCCGCGCCCGGAGCCAGCTCGCTGCTTGAGGCGGAGCTGTTGAGCGCCTGGTGGTGTCACTGCCTGTACGGCCGCCAGGGGGCGTCAGTGCCGCCGCCAGGAGAGCCTCCGCAGGCGCTCTGCCCCGCCTACCAGGAGGAGGAGGCGGAGGGGAGCTGCTGG
Seq A exon
GTAAGCGGCGGGGGCGGGGTCTAAGAGTTGTAAGAAAGGGGAGCGGACTGTAGGCGGGGCCTCCAAGACCGTGGGACTTTTTAACTCCTCTTGGGTTTGAAGAGAATCCTAAAGTGAGGGCAGCGTTCTTACTCAGATTAGTGTTGGAGTCTGGCTTGGAGGAGGTGGATTTCTTATGTCCGAGTACGGGACAGTTTGGAGTCCAGGGAAGCTCCAGGACTTTTGCTGTCCCCTCATTAACACACACACCCTCTTGCTACAG
Seq C2 exon
AACTACTCTCATTGGAGCCTGCTGTGCCGGGAAGAGGGGACCTGGTTCTTGGCTGGAATCAGAGACTTGCCCAGTGACTGCCTGCGTCCCAGAGTTTTCTACCCACTGCAGACCCACGGTCCATGGATCAGCCATGTGACTCGGGGGGCCTACCTGGAGGATCAGCTGGCCTGGGACTGGGGACCTGAGGGGGAGGAGACTGAGGCACAAACCTGTCCCCCTCACACAGAGAATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397:ENSBTAT00000055283:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(10.3=27.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTGTCACTGCCTGTA
R:
CTCAGGTCCCCAGTCCCAG
Band lengths:
304-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]