MmuINT1027539 @ mm10
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:127934390-127935665:-
Coord C1 exon
chr7:127935502-127935665
Coord A exon
chr7:127934628-127935501
Coord C2 exon
chr7:127934390-127934627
Length
874 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AATAATAGTGTTTTCTGCAGAAA
3' ss Score
5.42
Exon sequences
Seq C1 exon
AACTCGCCCCGGGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACGGCTGGTGGTGTCATTGCCTGTACGGCCGCCAGGGGGAGACCGTGCCGCGGCCAGGAGACCCGCCGCACTTGCTTTGTCCCGCCTACCAGGAGGAGGAAGAGGCGGGCCTATGTTGG
Seq A exon
GTGAGCAGCAGGAACTCGTTGCAGAAATCTCGTCCGGACCAGGACCCAGCTGGAGGTGGGAGGAGCTAGAACGGAGCGGGGCGTTCTGGCCTCCGCATGGTGCCAAAACTCTTATTTCTATTCTTTCTTTCCTTCCTCTTTTTTTTTTTTTTCTTACCCCAGACAGGGTTCCTCTGTGTATTCCTGGCTGTTTTAGAACTGTGTAGGGGCTGGAGAAATGGCTCAGTGGCTAAGAGCCCTGACTGCTCTTCCAGTTCAATTCCCAGCACCCACATGGCAGCTCGCAAATGCCTGTAACTCCAATATATGACACCCTCACGCAGGCATACATGCAGGCAAAGCACCAATGCACATAAAAGAAAAATACATAAAATTTTTAAATTAAAAAAAAAAAAAACCTTACTCTGTTGATGAGGCTGGCCTCAAATGAATTCAGAGATCCGCCTGAGTGTGCACCACTGCGCTCAGATAATTCCTTTTAAAAATATGAGTGTTGGGATCCAAGCCCGGGTCCTCCTGAACCAAGTTCTTTAACGACTGGGCCATCTCTCCAACCTGAGCTTGTCAGTTTGAAGAAAGGGTTGAAACCAAGTACACTGCGACTTTAATCCTACCACTCAGTAGGCAGAGGCAAGTGATCTCAGAGTTCGAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAACGAGAGGGGATGGGAGAGAAGGTATTGGGGTTTGTCAAGTGAGGGCTGGAGTTTTATACAAACCAGCACTGGAACTTGGCTTGAAGGGTTCTTGCAGGAAAGGAGAACCAGCAAAGCCCTCCAAGCTGAGGCTCTATAGGCCTGCAGCCTACACTCATGTGAGTAATAATAGTGTTTTCTGCAG
Seq C2 exon
AAAGATTCCAGTTGGAGCCTTCTGTGCCGTGAGGAGGGGACCTGGTTCCTGGCAGGATACAGAACCCTCTCAGATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATGGTCCGTGGATCCGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGGGAGGAGACCGAGAAACAGACTTGTCCCACACATACTGAGCACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371:ENSMUST00000118755:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.1=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGTCATTGCCTGTAC
R:
CGTGCTCAGTATGTGTGGGAC
Band lengths:
349-1223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types