MmuINT0127469 @ mm9
Intron Retention
Gene
ENSMUSG00000070371 | Prss36
Description
protease, serine, 36 [Source:MGI Symbol;Acc:MGI:1924863]
Coordinates
chr7:135077904-135079179:-
Coord C1 exon
chr7:135079016-135079179
Coord A exon
chr7:135078142-135079015
Coord C2 exon
chr7:135077904-135078141
Length
874 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
AATAATAGTGTTTTCTGCAGAAA
3' ss Score
5.42
Exon sequences
Seq C1 exon
AACTCGCCCCGGGCTCCAGCGCGCAGCTGGAGGCGCAGCTGTTGAACGGCTGGTGGTGTCATTGCCTGTACGGCCGCCAGGGGGAGACCGTGCCGCGGCCAGGAGACCCGCCGCACTTGCTTTGTCCCGCCTACCAGGAGGAGGAAGAGGCGGGCCTATGTTGG
Seq A exon
GTGAGCAGCAGGAACTCGTTGCAGAAATCTCGTCCGGACCAGGACCCAGCTGGAGGTGGGAGGAGCTAGAACGGAGCGGGGCGTTCTGGCCTCCGCATGGTGCCAAAACTCTTATTTCTATTCTTTCTTTCCTTCCTCTTTTTTTTTTTTTTCTTACCCCAGACAGGGTTCCTCTGTGTATTCCTGGCTGTTTTAGAACTGTGTAGGGGCTGGAGAAATGGCTCAGTGGCTAAGAGCCCTGACTGCTCTTCCAGTTCAATTCCCAGCACCCACATGGCAGCTCGCAAATGCCTGTAACTCCAATATATGACACCCTCACGCAGGCATACATGCAGGCAAAGCACCAATGCACATAAAAGAAAAATACATAAAATTTTTAAATTAAAAAAAAAAAAAACCTTACTCTGTTGATGAGGCTGGCCTCAAATGAATTCAGAGATCCGCCTGAGTGTGCACCACTGCGCTCAGATAATTCCTTTTAAAAATATGAGTGTTGGGATCCAAGCCCGGGTCCTCCTGAACCAAGTTCTTTAACGACTGGGCCATCTCTCCAACCTGAGCTTGTCAGTTTGAAGAAAGGGTTGAAACCAAGTACACTGCGACTTTAATCCTACCACTCAGTAGGCAGAGGCAAGTGATCTCAGAGTTCGAGGACAGCCAAGGCTACACAGAGAAACCCTGTCTCGAAAACGAGAGGGGATGGGAGAGAAGGTATTGGGGTTTGTCAAGTGAGGGCTGGAGTTTTATACAAACCAGCACTGGAACTTGGCTTGAAGGGTTCTTGCAGGAAAGGAGAACCAGCAAAGCCCTCCAAGCTGAGGCTCTATAGGCCTGCAGCCTACACTCATGTGAGTAATAATAGTGTTTTCTGCAG
Seq C2 exon
AAAGATTCCAGTTGGAGCCTTCTGTGCCGTGAGGAGGGGACCTGGTTCCTGGCAGGATACAGAACCCTCTCAGATGGTTGTCTCCGACCCCGAGCCTTTTCCCCAATGCAGACTCATGGTCCGTGGATCCGTCATGTGACTCAGGGAGCTTACCTGGAGGACCAGCTAACCTGGGACTGGGGCCCTGAAGGGGAGGAGACCGAGAAACAGACTTGTCCCACACATACTGAGCACGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070371-Prss36:NM_001081374:10
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(23.3=100)
A:
NA
C2:
PF0008921=Trypsin=PD(18.1=52.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGTGTCATTGCCTGTAC
R:
CGTGCTCAGTATGTGTGGGAC
Band lengths:
349-1223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: