HsaEX6043370 @ hg38
Exon Skipping
Gene
ENSG00000178226 | PRSS36
Description
protease, serine 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr16:31141469-31142644:-
Coord C1 exon
chr16:31142481-31142644
Coord A exon
chr16:31141723-31141960
Coord C2 exon
chr16:31141469-31141610
Length
238 bp
Sequences
Splice sites
3' ss Seq
CACACACTTTGTTGCTGCAGAAT
3' ss Score
7.79
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
AACCCGCGCTTGGCCCAGGCGCGCTGCTGGAGGCGGAGCTGTTAGGCGGCTGGTGGTGCCACTGCCTGTACGGCCGCCAGGGGGCGGCAGTACCGCTGCCCGGAGACCCGCCGCACGCGCTCTGCCCTGCCTACCAGGAAAAGGAGGAGGTGGGCAGCTGCTGG
Seq A exon
AATGACTCGCGTTGGAGCCTTTTGTGCCAGGAGGAGGGGACCTGGTTTCTGGCTGGAATCAGAGACTTTCCCAGTGGCTGTCTACGTCCCCGAGCCTTCTTCCCTCTGCAGACTCATGGCCCATGGATCAGCCATGTGACTCGGGGAGCCTACCTGGAGGACCAGCTAGCCTGGGATTGGGGCCCTGATGGGGAGGAGACTGAGACACAGACTTGTCCCCCACACACAGAGCATGGTG
Seq C2 exon
CCTGTGGCCTGCGGCTGGAGGCTGCTCCAGTGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTGGCTGGTGATCGAGTCTGCACTGGGATCCTCCTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178226-'15-18,'15-17,17-18=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(24.3=100)
A:
PF0008921=Trypsin=PD(16.7=46.2)
C2:
PF0008921=Trypsin=PU(19.7=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTTAGGCGGCTGGTG
R:
CACAGTGAGTGGCTGCCAG
Band lengths:
262-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains