BtaEX6109903 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037397 | PRSS36
Description
protease, serine, 36 [Source:HGNC Symbol;Acc:HGNC:26906]
Coordinates
chr25:27494126-27495043:-
Coord C1 exon
chr25:27494880-27495043
Coord A exon
chr25:27494380-27494617
Coord C2 exon
chr25:27494126-27494267
Length
238 bp
Sequences
Splice sites
3' ss Seq
CACACACCCTCTTGCTACAGAAC
3' ss Score
7.9
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
Exon sequences
Seq C1 exon
AACCCGCGCCCGGAGCCAGCTCGCTGCTTGAGGCGGAGCTGTTGAGCGCCTGGTGGTGTCACTGCCTGTACGGCCGCCAGGGGGCGTCAGTGCCGCCGCCAGGAGAGCCTCCGCAGGCGCTCTGCCCCGCCTACCAGGAGGAGGAGGCGGAGGGGAGCTGCTGG
Seq A exon
AACTACTCTCATTGGAGCCTGCTGTGCCGGGAAGAGGGGACCTGGTTCTTGGCTGGAATCAGAGACTTGCCCAGTGACTGCCTGCGTCCCAGAGTTTTCTACCCACTGCAGACCCACGGTCCATGGATCAGCCATGTGACTCGGGGGGCCTACCTGGAGGATCAGCTGGCCTGGGACTGGGGACCTGAGGGGGAGGAGACTGAGGCACAAACCTGTCCCCCTCACACAGAGAATGGTG
Seq C2 exon
CCTGTGGCTTGCAGCCAGAGCCGGCTCCGATGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCATGTAGCCGGAGAGCGAGTCTGCGCTGGCGTCCTCGTGGCCCCAGGCTGGGTCCTGGCAGCCACTCACTGTGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037397-'9-11,'9-10,12-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.225 C2=0.083
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(10.3=27.3)
A:
NO
C2:
PF0008921=Trypsin=PU(20.5=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGAGCGCCTGGTGG
R:
CACAGTGAGTGGCTGCCAG
Band lengths:
261-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]