BtaEX0029443 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94077185-94099806:+
Coord C1 exon
chr11:94077185-94093206
Coord A exon
chr11:94093309-94093434
Coord C2 exon
chr11:94099651-94099806
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGCATGTTGGTGTTTCCCAGGGA
3' ss Score
7.54
5' ss Seq
AAGGTAGCT
5' ss Score
6.77
Exon sequences
Seq C1 exon
GCCAATCCATGGCCCCAAGGGGGCTCGATTTTGAGAGACCTTGTACCCCTACCCGGCGCTCCGGCCGCCTCCGCACTTACAGACCCGGGGGAAGGCCACCGTCAGGATCCGGCACCGCCAGGAGCTCCGGCCCCTCGGGGCTCCGGGAAGGGGGAGGGGCAGGGAACCCGAGCCAAAGGGGGACCCAACGGAACCGGAAGGGCAGCCCTCGCCGGACAAAGACAACTTCCAGGTCCCATGGTCCTCTCCGCCAATCGGAAGGCTGGGAGGGCGGCGGGCCAGGAGAGGGATTCTCCGTGCCGTGGGCGAGATGATCGGGTACCCCGGGCTCCCGCTAGCTTCTCCGCCCGCGTGAGCCGACGAGCAAGTGCTGTGGCTTCTTAGCGCCTGGGGCTCAGGCCCCGCGCACTTCGCTCCTTCTCAGCCGCTCCTCTCTAGCTACGACTCGGCCGTCTGCCGTCTGCGTGGGCCTGAAAGGCGCAGCTGCACTTAAAGCGTCG
Seq A exon
GGATTTGCATTCTCCGTTACCTACAACTTGCTGATTGTTCACAACTCTCTTTCGCCTGACCATCAGCTCTCTTGCGCCAGGGCCAGCTGCCGAGAAGACATGTCCAATTGGTTTTCCACTGTTAAG
Seq C2 exon
ATGGAGTAGGAAGAACATGGAATCCATCTCTACCTAGGCAACAATTATACTGGCAGACTGTCTGAAGTAACTATTTCGGAACTCTGGAATCTATTTGAATGCTTGCATGTTCCAGGGGAAAATCTGGTTGGTCATCTGAGGTTAATTTCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGTGCTGTGGCTTCTTAG
R:
TTTCCCCTGGAACATGCAAGC
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development