BtaEX0029444 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94077185-94122532:+
Coord C1 exon
chr11:94077185-94093206
Coord A exon
chr11:94099651-94099806
Coord C2 exon
chr11:94122333-94122532
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTCTGTTCCTCAGATG
3' ss Score
10.37
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAATCCATGGCCCCAAGGGGGCTCGATTTTGAGAGACCTTGTACCCCTACCCGGCGCTCCGGCCGCCTCCGCACTTACAGACCCGGGGGAAGGCCACCGTCAGGATCCGGCACCGCCAGGAGCTCCGGCCCCTCGGGGCTCCGGGAAGGGGGAGGGGCAGGGAACCCGAGCCAAAGGGGGACCCAACGGAACCGGAAGGGCAGCCCTCGCCGGACAAAGACAACTTCCAGGTCCCATGGTCCTCTCCGCCAATCGGAAGGCTGGGAGGGCGGCGGGCCAGGAGAGGGATTCTCCGTGCCGTGGGCGAGATGATCGGGTACCCCGGGCTCCCGCTAGCTTCTCCGCCCGCGTGAGCCGACGAGCAAGTGCTGTGGCTTCTTAGCGCCTGGGGCTCAGGCCCCGCGCACTTCGCTCCTTCTCAGCCGCTCCTCTCTAGCTACGACTCGGCCGTCTGCCGTCTGCGTGGGCCTGAAAGGCGCAGCTGCACTTAAAGCGTCG
Seq A exon
ATGGAGTAGGAAGAACATGGAATCCATCTCTACCTAGGCAACAATTATACTGGCAGACTGTCTGAAGTAACTATTTCGGAACTCTGGAATCTATTTGAATGCTTGCATGTTCCAGGGGAAAATCTGGTTGGTCATCTGAGGTTAATTTCAGTCAAG
Seq C2 exon
GCATTTTTAAAATATTTAATCATTCATGAGTTGAGCTTCATTCTTGAGTCATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCCTCAGACTCTGTGTCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAGGCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.900
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCAGCCGCTCCTCTCTA
R:
TGGTGTCTCATCTCCTTGCCT
Band lengths:
242-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development