BtaEX0029688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020791 | RAPGEF1
Description
Rap guanine nucleotide exchange factor (GEF) 1 [Source:HGNC Symbol;Acc:HGNC:4568]
Coordinates
chr11:101791690-101863446:-
Coord C1 exon
chr11:101863365-101863446
Coord A exon
chr11:101809509-101809685
Coord C2 exon
chr11:101791690-101791829
Length
177 bp
Sequences
Splice sites
3' ss Seq
GCTCTTATGGTTTATCACAGGAT
3' ss Score
6.44
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
NNGCGGCCCGGCCCGGGCCCGATGAGCGGCGGCCTCGGCCTCCGGCGCAGCCCGGAAATGTCCGGCAAGATCGAGAAAGCAG
Seq A exon
GATGTTGAGTGTCGTTCTCTGTGCTGTGCAGGAGGACCTTGTTGTGTATCCATCCTATATATGGTAGTCTGCATCTGGTGATTTCAAGCTCTCAATCCGTCCCTCCCCCACACCTCCTCCTTGGCAGCCACAAGTCCTTCTCTTCTCTATGCCTGGGAATCTGTTTCTGCTTCATAG
Seq C2 exon
ACTCTCAGCGTTCTCATCTCTCCTCCTTCACCATGAAGCTGAAGGACAAATTCCACTCGCCCAAAATCAAGAGGACGCCATCAAAGAAGGGAAAACCAGCCGAGGTGTCTGTGAAGATTCCAGAGAAGCCCGTGAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020791_MULTIEX2-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.532
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000032663fB5748
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGCCCGGAAATGTCC
R:
TCACGGGCTTCTCTGGAATCT
Band lengths:
172-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development