BtaEX0029750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63410493-63415666:-
Coord C1 exon
chr17:63415537-63415666
Coord A exon
chr17:63413483-63413564
Coord C2 exon
chr17:63410493-63410581
Length
82 bp
Sequences
Splice sites
3' ss Seq
CTTACCTCATCTGTCCTCAGGGA
3' ss Score
10.82
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GAATCGACAGCTGGATCAACCTGAGCCGCGTGGACCCGGACTCGGAGGTGCAGGGTGAGATCTGCCTGTCCGTGCAGACGCTGGAGGACGTGCGGGGCCGTTGTCTTCACTGTCACGTGCTCCAGGCTAG
Seq A exon
GGACCTGGCCCCCCGAGACATCTCCGGCACGTCTGACCCATTTGCGCGTGTGTTTTGGGGCAGCCAGAGCTTGGAGACTTCG
Seq C2 exon
GTGGAGTTCCCCCCACAGGTCCTGCAACACAACCCGCCCAATGGCTGGTTCCGCCTCCTGCCCTTTCCCAGAGCAGAGGAGGATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739_MULTIEX2-1/7=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.8=18.2)
A:
PF0016825=C2=FE(32.9=100)
C2:
PF0016825=C2=PD(1.2=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGCAGGGTGAGATCT
R:
TCCTCCTCTGCTCTGGGAAAG
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development