GgaEX1048324 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11196795-11197942:-
Coord C1 exon
chr15:11197813-11197942
Coord A exon
chr15:11197019-11197100
Coord C2 exon
chr15:11196795-11196932
Length
82 bp
Sequences
Splice sites
3' ss Seq
TGACCCCCATCCTCCCACAGGGA
3' ss Score
11.06
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCATTGACAGCTGGCTCAGCCTGGCGCCTGTGCATCCTGACCAGGAGGTGCAGGGTGAGATCCACCTGGAGGTGAGGATGCCTGAGCAGGGCCACCCACGGGTGCTGCGCTGCCACCTCATTGCAGCCAG
Seq A exon
GGACCTGGCTCCCCGGGACCCCTCAGGCACCTCAGACCCCTTTGTCCGGGTGTCGTGCTGTGGGCACACGCAGGAGACAGCC
Seq C2 exon
GTGATTAAGAAGACCCGCTTCCCACACTGGGATGAGGTGCTGGAGTTCGAGCTGGCACAGGATGAGCCAGGGGACAGCATGCTGAGCGTGGAGGTGTGGGACTGGGACATCGTGGGCAAGAATGACTTCCTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=PU(9.5=18.2)
A:
PF0016825=C2=FE(32.1=100)
C2:
PF0016825=C2=FE(53.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGAGGATGCCTGAG
R:
GATGTCCCAGTCCCACACCTC
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]