BtaEX0029979 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57174964-57181349:-
Coord C1 exon
chr5:57181192-57181349
Coord A exon
chr5:57175205-57175284
Coord C2 exon
chr5:57174964-57175073
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCTTGTGCTCCTTAGGAT
3' ss Score
10.61
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CAACAGGAGCAGGACCCCACGAATTTGTACATCTCAAACCTCCCGCTGTCAATGGATGAGCAAGAACTGGAGGGAATGCTGAAGCCCTTTGGCCAGGTTATCTCCACTAGAATCCTTCGAGACACCAGTGGGACCAGCAGAGGGGTTGGCTTTGCCAG
Seq A exon
GATGGAGTCCACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAG
Seq C2 exon
CCCCATCCGATCCCTTGCTTTGCAAATTTGCTGATGGGGGTCCAAAGAAACGACAGAACCAAGGAAAATTTGTACAGAACGGACGGGCCTGGCCAAGAAATGGAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830_MULTIEX1-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=0.143 C2=0.784
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=PD(9.1=18.9),PF0007617=RRM_1=PU(65.7=83.0)
A:
PF0007617=RRM_1=PD(32.8=78.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAATGCTGAAGCCCTTTG
R:
GCCCGTCCGTTCTGTACAAAT
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development