DreEX6080849 @ danRer10
Exon Skipping
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25830041-25830555:+
Coord C1 exon
chr23:25830041-25830198
Coord A exon
chr23:25830285-25830364
Coord C2 exon
chr23:25830446-25830555
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTGCAATTACTCTCCGTTAGGAT
3' ss Score
5.18
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CAACAGGAACAGGACCCCACCAATCTGTACATCTCCAATCTGCCTCTGTCTATGGACGAACAGGAGTTAGAGAGCATGCTCAAGCCCTTCAGCCAGGTCATCTCCACACGTATCTTACGGGACGCAAACGGCACCAGCCGCGGAGTGGGTTTCGCCAG
Seq A exon
GATGGAATCGACTGAAAAATGTGAAGCCATCATTCAACATTTTAATGGCAAATACATCAAGACTCCTCCTGGAGTAGCAG
Seq C2 exon
TGCCTACAGAACCATTGTTGTGTAAGTTTGCCGACGGAGGACAGAAGAAACGTCAGAATCAGGGGAAATATCACCAGAACGGACGGCAGTGGTCGAGAGAGGGTGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=0.000 C2=0.676
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(65.7=83.0)
A:
PF0007617=RRM_1=PD(32.8=78.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCCAGGTCATCTCCACA
R:
TTCACCCTCTCTCGACCACTG
Band lengths:
178-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]