BtaEX0031469 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34223915-34229099:+
Coord C1 exon
chr21:34223915-34224016
Coord A exon
chr21:34227840-34228026
Coord C2 exon
chr21:34228982-34229099
Length
187 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTTCTTTTATAGCCA
3' ss Score
11.56
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTCTTTGTATTTTTCTGTCAAATAGGGATCTACATCATCCAGTTGATCGGCATCCCTAGCCTTGGGGACAG
Seq A exon
CCAATCTAGAAGTGTGGTAACTCGTGATTTTGATTGCTCTTTCCTGAACGATTATGATGTTGGCCATCTTTTATGTGCTTGCATATTTTCTTTGGAGAAATGTCTATTCAAATTGTTTTCTAATTTAGTATTTGGATTGTCTGTTGAATTCTTCATATATTCAGGATGCTGCATAGCTACTTGTCAG
Seq C2 exon
TGGTTGGATTGCAGCCCTGTCTACGATGAAGCACAACTTGGCTGTGTCGGTCATCATGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCACTCTTCCTCCTGAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=PD(26.6=74.6)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Inclusion Isoform:
ENSBTAT00000007681fB6151
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCTTTCAGCTTCTTCGTGT
R:
TCAGGAGGAAGAGTGAGAGCA
Band lengths:
210-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development