BtaEX0031470 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005844 | SCAMP2
Description
Bos taurus secretory carrier membrane protein 2 (SCAMP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102170]
Coordinates
chr21:34223915-34230892:+
Coord C1 exon
chr21:34223915-34224016
Coord A exon
chr21:34228982-34229099
Coord C2 exon
chr21:34229362-34230892
Length
118 bp
Sequences
Splice sites
3' ss Seq
GGCCTCCTCCGCCTTTGCAGTGG
3' ss Score
7.14
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTCTTTGTATTTTTCTGTCAAATAGGGATCTACATCATCCAGTTGATCGGCATCCCTAGCCTTGGGGACAG
Seq A exon
TGGTTGGATTGCAGCCCTGTCTACGATGAAGCACAACTTGGCTGTGTCGGTCATCATGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCACTCTTCCTCCTGAAGCGG
Seq C2 exon
GTGCACTCCCTGTACCGCAGGACAGGGGCCAGCTTCCAGCAGGCCCAGGAGGAGTTTTCCCAGGGCATCTTCAGTAGCAGGACCTTCCGCAGTGCCGCCTCATCTGCTGCCCAAGGAGCGTTCCAGGGGAATTAGTCCTCCTGACTCCTCCCTCTGCCCTGGCCTTCTCTCTCTCACCTGCCTTCTGAGCTGCACTTTCCACGGGTGCCTTAAGCATTGGGTATGCCCAGCACAGACCTGGGGAGGGTCTTGCCCATGGCTCTTCTTCCTCCCTCAGCAACCATCTCTCCCTTCCACCTGAGGAAAGGGGAGGGAGGGACAGGGACTTTTTTCTACACAAGAGGAAAAAAAAAAAAGCTGTCTTTTCTTCTCTGGTGGTGGTTTGATAGGATTTTTTTGTATCTTTGGAAGCAATGGGACTGAAGTTCTCTTCTTCACAGATACACACATATACTCACACACATACAAACACAAACACACGCACTTGGGATCACTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005844_MULTIEX2-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGATCGGCATCCCTAGC
R:
TTAAGGCACCCGTGGAAAGTG
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development