DreEX0064335 @ danRer10
Exon Skipping
Gene
ENSDARG00000010279 | scamp2
Description
secretory carrier membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2702]
Coordinates
chr25:2889823-2896150:-
Coord C1 exon
chr25:2896049-2896150
Coord A exon
chr25:2893349-2893466
Coord C2 exon
chr25:2889823-2890762
Length
118 bp
Sequences
Splice sites
3' ss Seq
GATGTTTGGTGTGTTTTCAGCGG
3' ss Score
7.42
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTCTGACAGCTCCTTCAATTTCTTCTTCTTCTTCTTCGTTTTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAG
Seq A exon
CGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATG
Seq C2 exon
GTTCATTCGCACTATCGCCGCACCGGGGCCAGTTTCCAGAAGGCACAGCAGGAGTTTTCTCAGGGTGTCCTGACAAACCGCACTTTCCAGAGCGCAGCCACTAGTGCCGCCACCACGGCCGCCCAGAGCTCACTGCAGAGGAACTAGAACCACAAAAACAGCACCAGATCACACGTCTCCTTCCCAGAATCCTCTGCTCATTGGCCTGCTGCTCCAAAGCCCAGCTACGGCCCCAAAACTCCATCGGGTCCCAGTACGGACTGCAGAGGCACTACTTTCATGGTTATTTTTGGGTTTTTGAAGGCGAAGGTATGAAGCGTAAATGTTTGTATATTTGTGTGTGCGCAGGAGTAGTCATCCACATCAGTAGTGCTGTAAATATATATATATAAAGTAATTTAACGTTTCCCAGTCATGCAAAGTGGTACTTAAGTGTCCTTAAATTAAAATGATCATGAAGGAGCTCATCTGTTAAAGCCTTGATGAAGTTTAGATGTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010279_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=16.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCGTCATCCAGGCTGTG
R:
CAGGCCAATGAGCAGAGGATT
Band lengths:
252-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]