DreEX0064334 @ danRer10
Exon Skipping
Gene
ENSDARG00000010279 | scamp2
Description
secretory carrier membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2702]
Coordinates
chr25:2893349-2896150:-
Coord C1 exon
chr25:2896049-2896150
Coord A exon
chr25:2894022-2894148
Coord C2 exon
chr25:2893349-2893466
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTCTTCTTCTTCTCCTTCAGATG
3' ss Score
12.27
5' ss Seq
CATGTAAAA
5' ss Score
-0.73
Exon sequences
Seq C1 exon
GTCTGACAGCTCCTTCAATTTCTTCTTCTTCTTCTTCGTTTTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAG
Seq A exon
ATGTATTTCTCTTCCTGTCTCTCCGAGCGTCTCTTCCTGCACTAACGGTTTTCTGCTGCTGGACTTCCTGTAAAACTCTTGCTTCCTGTCTGCAGTTTGTCGCTCTTCAATGTTCTTCTTCCCTCAT
Seq C2 exon
CGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010279_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=PD(9.7=56.0)
C2:
PF041448=SCAMP=FE(21.9=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGACAGCTCCTTCAATTTCT
R:
TTTTGAGTAAAACGACAGAGAGCG
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]