RnoEX0078297 @ rn6
Exon Skipping
Gene
ENSRNOG00000019136 | Scamp2
Description
secretory carrier membrane protein 2 [Source:RGD Symbol;Acc:68348]
Coordinates
chr8:62362036-62368214:+
Coord C1 exon
chr8:62362036-62362137
Coord A exon
chr8:62366499-62366619
Coord C2 exon
chr8:62366836-62368214
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCTGGTTTCTCCTTTTATAGTGG
3' ss Score
7.27
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGAATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
Seq A exon
TGGTTGGCTCGCAGCCCTCTCTACAGTGAATAAGGGGCCCTTAGCTGTGACCATCATCATGATGGTAGTGGCTGGCTTCTTTACCCTCTGTGCTGGGCTCTCACTCTTCCTCCTGCAGCGG
Seq C2 exon
GTCCATGCCTTCTACCGCCGAACAGGAGCCAGCTTCCAGCAGGCTCAGGAAGAATTCTCCCAGGGCATCTTCAGCAGCAGAACCTTCCGCACTGCTGCCTCGTCTGCTGCCCGAGGAACCTTCCAGGGGAATTAGTCTTCCTGACTCTCCTTCCCTCAGCCCTGGCCTCTGTCACCTGCCTTCTGAGCTGCACTTTCCATGGGTGCCTTAGCAGTGGCTGTGCCCAGCACAGACCAGGCAGGGATTCGTCTTGTCCCTGCACTTTCCTCAGTAGTCAGCTTTCTCTTCTACAGGAGGGAAGGACAGGAAGGGACAAGGACTTTTTTTTTTAACACATGGGAAAAGAAAAAAATAACAAAGCTGTCTTTCCTTTTCTAACGGTGGTTTGGTAGGATTTTGTCTGGAAGCAATGGGCCTGCTTTTCCTGAAAACAAATGGACTCATGGGTATGGGATCATGGGCCAGCCTGGGCTCACTGTACCAGGGATTTCCCACAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019136-'16-20,'16-18,17-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.0=100)
A:
PF041448=SCAMP=FE(22.3=100)
C2:
PF041448=SCAMP=PD(4.5=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGTTGATTGGCTTGCCT
R:
TAAGGCACCCATGGAAAGTGC
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]