GgaEX1051010 @ galGal4
Exon Skipping
Gene
ENSGALG00000001689 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:10564]
Coordinates
chr10:1907371-1911188:+
Coord C1 exon
chr10:1907371-1907499
Coord A exon
chr10:1910015-1910132
Coord C2 exon
chr10:1910531-1911188
Length
118 bp
Sequences
Splice sites
3' ss Seq
TACCCCGCTCTCTCTTCCAGCGG
3' ss Score
10.98
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGAGACAGAACAACTGGCCACCCCTCCCCAGGAAGTGTCCGATCAAGCCGTGCTTCTATCAGGACTTTTCTGCAGACATCCCAGCTGACTACCAGCGGATATGCAAGATGCTTTACTACTTGTGGATGC
Seq A exon
CGGCTGGATTGCGGCGCTGTCGGAGCTGCATAGGAACACGGCCGTGGCCATCATCATGATGGTGGTGGCAGGGTTCTTCACGCTCTGTGCAGTCCTCTCGCTCTTCCTCCTCAAGCAG
Seq C2 exon
GTGCATTCCCTGTACCGGCGCACGGGAGCCAGCTTCCAAAGGGCTCAGGAGGAGTTTTCCCAAGGCATCCTCACCAACAGGAGCTTCCAGAACGCGGCTGCCGGGGCGGCCTCCTCAGCTGCACGCAGTGCTTTCCGGGGCAATTAGCCCTCCCCGAGGGCCACCTCTGCCTCTCTCCCCCTTCGGTTGTCAGCCCAACCTTCATTTTCTAACGATGCACTTTTCGTGGGTACCGCCTTAGCTCTGTGGTGCCGACCCCAATGAGAAGAGATCTGCATTTTAGCTTCAGTTGGCTTCGGTTTGTGACAGTTAAGTTTCCCTGCTTCGCTCCGGGACGTGGGGAGAGGGGGAGATGTTCTCTGAAGCAAATCTCTTATCTCTGTCCGGGCCGTGCAGAGCTTTCGTCTCCTCCTCCTCTCCCCCCGTCAGCAGCAGGGAGGTGAGAAGCAGGGATTTGGATTTTACTTTCTCTTTTCTATCAGCCCGTGCTATGAACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF117403=KfrA_N=PD(3.0=6.8),PF120723=DUF3552=PD(13.0=13.6),PF041448=SCAMP=PU(30.4=95.5)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=16.3)
Main Skipping Isoform:
ENSGALT00000002583fB3389
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTCCGATCAAGCCGTG
R:
CTAATTGCCCCGGAAAGCACT
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]